Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:35:27 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the KEGGprofile package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 940/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
KEGGprofile 1.32.0 (landing page) Shilin Zhao
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: KEGGprofile |
Version: 1.32.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:KEGGprofile.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings KEGGprofile_1.32.0.tar.gz |
StartedAt: 2021-05-06 03:04:53 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 03:08:08 -0400 (Thu, 06 May 2021) |
EllapsedTime: 195.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: KEGGprofile.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:KEGGprofile.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings KEGGprofile_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/KEGGprofile.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘KEGGprofile/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘KEGGprofile’ version ‘1.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘KEGGprofile’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_pathway 8.208 0.375 8.876 convertId 4.786 0.092 10.104 download_KEGGfile 0.045 0.011 5.133 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
KEGGprofile.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL KEGGprofile ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘KEGGprofile’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGprofile)
KEGGprofile.Rcheck/KEGGprofile-Ex.timings
name | user | system | elapsed | |
col_by_value | 0.021 | 0.002 | 0.023 | |
convertId | 4.786 | 0.092 | 10.104 | |
download_KEGGfile | 0.045 | 0.011 | 5.133 | |
download_latest_pathway | 0 | 0 | 0 | |
find_enriched_pathway | 2.019 | 0.081 | 2.105 | |
newIdMatrix | 0.001 | 0.000 | 0.002 | |
parse_XMLfile | 0.082 | 0.001 | 0.084 | |
plot_pathway | 8.208 | 0.375 | 8.876 | |
plot_pathway_cor | 3.140 | 0.062 | 3.222 | |
plot_pathway_overall | 2.545 | 0.060 | 2.606 | |
plot_profile | 1.053 | 0.034 | 1.088 | |