Multiple platform build/check report for BioC 3.12 - CHECK report for Informeasure on tokay1

Package: Informeasure

Version: 1.0.0

Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Informeasure.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings Informeasure_1.0.0.tar.gz

StartedAt: 2021-05-06 03:50:05 -0400 (Thu, 06 May 2021)

EndedAt: 2021-05-06 03:50:37 -0400 (Thu, 06 May 2021)

EllapsedTime: 32.3 seconds

RetCode: 0

Status: OK

CheckDir: Informeasure.Rcheck

Warnings: 0

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Informeasure.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings Informeasure_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/Informeasure.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Informeasure/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Informeasure' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Informeasure' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/Informeasure_1.0.0.tar.gz && rm -rf Informeasure.buildbin-libdir && mkdir Informeasure.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Informeasure.buildbin-libdir Informeasure_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL Informeasure_1.0.0.zip && rm Informeasure_1.0.0.tar.gz Informeasure_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 55900  100 55900    0     0  1730k      0 --:--:-- --:--:-- --:--:-- 1819k

install for i386

* installing *source* package 'Informeasure' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Informeasure'
    finding HTML links ... done
    CMI.measure                             html  
    CMI.plugin                              html  
    II.measure                              html  
    II.plugin                               html  
    MI.measure                              html  
    MI.plugin                               html  
    PID.measure                             html  
    PID.plugin                              html  
    PMI.measure                             html  
    PMI.plugin                              html  
    discretize1D                            html  
    discretize1d.uniform_frequency          html  
    discretize1d.uniform_width              html  
    discretize2D                            html  
    discretize2d.uniform_frequency          html  
    discretize2d.uniform_width              html  
    discretize3D                            html  
    discretize3d.uniform_frequency          html  
    discretize3d.uniform_width              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Informeasure' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Informeasure' as Informeasure_1.0.0.zip
* DONE (Informeasure)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'Informeasure' successfully unpacked and MD5 sums checked


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> 
> library(Informeasure)
> 
> test_check("Informeasure")
Estimating optimal shrinkage intensity lambda.freq (frequencies): 0.9731 
Estimating optimal shrinkage intensity lambda.freq (frequencies): 0.9731 
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
> 
> proc.time()
   user  system elapsed 
   0.81    0.07    0.90


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> 
> library(Informeasure)
> 
> test_check("Informeasure")
Estimating optimal shrinkage intensity lambda.freq (frequencies): 0.9544 
Estimating optimal shrinkage intensity lambda.freq (frequencies): 0.9544 
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
> 
> proc.time()
   user  system elapsed 
   0.78    0.06    0.87

name	user	system	elapsed
CMI.measure	0.02	0.00	0.01
CMI.plugin	0	0	0
II.measure	0	0	0
II.plugin	0.01	0.00	0.02
MI.measure	0	0	0
MI.plugin	0.02	0.00	0.02
PID.measure	0.01	0.00	0.01
PID.plugin	0	0	0
PMI.measure	0.02	0.00	0.02
PMI.plugin	0	0	0
discretize1D	0	0	0
discretize1d.uniform_frequency	0	0	0
discretize1d.uniform_width	0	0	0
discretize2D	0	0	0
discretize2d.uniform_frequency	0	0	0
discretize2d.uniform_width	0	0	0
discretize3D	0	0	0
discretize3d.uniform_frequency	0	0	0
discretize3d.uniform_width	0	0	0

name	user	system	elapsed
CMI.measure	0	0	0
CMI.plugin	0.01	0.00	0.02
II.measure	0	0	0
II.plugin	0.02	0.00	0.01
MI.measure	0	0	0
MI.plugin	0.01	0.02	0.03
PID.measure	0.02	0.00	0.02
PID.plugin	0.01	0.00	0.02
PMI.measure	0.02	0.00	0.01
PMI.plugin	0.01	0.00	0.02
discretize1D	0	0	0
discretize1d.uniform_frequency	0	0	0
discretize1d.uniform_width	0	0	0
discretize2D	0	0	0
discretize2d.uniform_frequency	0	0	0
discretize2d.uniform_width	0	0	0
discretize3D	0	0	0
discretize3d.uniform_frequency	0	0	0
discretize3d.uniform_width	0	0	0

CHECK report for Informeasure on tokay1

Summary

Command output

Installation output

Tests output

Example timings