Robert Castelo
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/GenomicScores |
| Branch: RELEASE_3_12 |
| Last Commit: 1a877e1 |
| Last Changed Date: 2020-10-27 11:23:24 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:28 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the GenomicScores package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 721/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GenomicScores 2.2.0 (landing page) Robert Castelo
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GenomicScores |
| Version: 2.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GenomicScores_2.2.0.tar.gz && rm -rf GenomicScores.buildbin-libdir && mkdir GenomicScores.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicScores.buildbin-libdir GenomicScores_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GenomicScores_2.2.0.zip && rm GenomicScores_2.2.0.tar.gz GenomicScores_2.2.0.zip |
| StartedAt: 2021-05-05 17:44:33 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:45:47 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 73.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GenomicScores_2.2.0.tar.gz && rm -rf GenomicScores.buildbin-libdir && mkdir GenomicScores.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicScores.buildbin-libdir GenomicScores_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GenomicScores_2.2.0.zip && rm GenomicScores_2.2.0.tar.gz GenomicScores_2.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'GenomicScores' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicScores'
finding HTML links ... done
GScores-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYvYN7i/R.INSTALL14886cb21955/GenomicScores/man/GScores-class.Rd:240: file link 'phastCons100way.UCSC.hg19' in package 'phastCons100way.UCSC.hg19' does not exist and so has been treated as a topic
GenomicScores-defunct html
GenomicScores-deprecated html
availableGScores html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYvYN7i/R.INSTALL14886cb21955/GenomicScores/man/availableGScores.Rd:60: file link 'phastCons100way.UCSC.hg19' in package 'phastCons100way.UCSC.hg19' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYvYN7i/R.INSTALL14886cb21955/GenomicScores/man/availableGScores.Rd:61: file link 'MafDb.1Kgenomes.phase1.hs37d5' in package 'MafDb.1Kgenomes.phase1.hs37d5' does not exist and so has been treated as a topic
gscores html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYvYN7i/R.INSTALL14886cb21955/GenomicScores/man/gscores.Rd:110: file link 'phastCons100way.UCSC.hg19' in package 'phastCons100way.UCSC.hg19' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYvYN7i/R.INSTALL14886cb21955/GenomicScores/man/gscores.Rd:111: file link 'MafDb.1Kgenomes.phase1.hs37d5' in package 'MafDb.1Kgenomes.phase1.hs37d5' does not exist and so has been treated as a topic
igscores html
makeGScoresPackage html
rgscores html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYvYN7i/R.INSTALL14886cb21955/GenomicScores/man/rgscores.Rd:57: file link 'phastCons100way.UCSC.hg19' in package 'phastCons100way.UCSC.hg19' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpYvYN7i/R.INSTALL14886cb21955/GenomicScores/man/rgscores.Rd:58: file link 'MafDb.1Kgenomes.phase1.hs37d5' in package 'MafDb.1Kgenomes.phase1.hs37d5' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicScores' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicScores' as GenomicScores_2.2.0.zip
* DONE (GenomicScores)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'GenomicScores' successfully unpacked and MD5 sums checked