Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:28 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the GenomicFiles package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 717/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GenomicFiles 1.26.0 (landing page) Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GenomicFiles |
Version: 1.26.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GenomicFiles_1.26.0.tar.gz && rm -rf GenomicFiles.buildbin-libdir && mkdir GenomicFiles.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicFiles.buildbin-libdir GenomicFiles_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GenomicFiles_1.26.0.zip && rm GenomicFiles_1.26.0.tar.gz GenomicFiles_1.26.0.zip |
StartedAt: 2021-05-05 18:03:51 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 18:05:13 -0400 (Wed, 05 May 2021) |
EllapsedTime: 81.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GenomicFiles_1.26.0.tar.gz && rm -rf GenomicFiles.buildbin-libdir && mkdir GenomicFiles.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicFiles.buildbin-libdir GenomicFiles_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GenomicFiles_1.26.0.zip && rm GenomicFiles_1.26.0.tar.gz GenomicFiles_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 289k 100 289k 0 0 20.0M 0 --:--:-- --:--:-- --:--:-- 21.7M install for i386 * installing *source* package 'GenomicFiles' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GenomicFiles' finding HTML links ... done GenomicFiles-class html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/GenomicFiles-class.Rd:111: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic GenomicFiles-deprecated html VcfStack-class html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:78: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:98: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:129: file link 'VcfFileList' in package 'VariantAnnotation' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:130: file link 'VcfFileList' in package 'VariantAnnotation' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:133: file link 'seqinfo<-' in package 'GenomeInfoDb' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:139: file link 'seqlevelsStyle<-' in package 'GenomeInfoDb' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:143: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:148: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:155: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:162: file link 'CharacterList' in package 'IRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:170: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:180: file link 'ScanVcfParam' in package 'VariantAnnotation' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:227: file link 'VcfFile' in package 'VariantAnnotation' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/VcfStack-class.Rd:227: file link 'VcfFileList' in package 'VariantAnnotation' does not exist and so has been treated as a topic pack-methods html reduceByFile-methods html reduceByRange-methods html reduceByYield html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/reduceByYield.Rd:12: file link 'BamFile' in package 'Rsamtools' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/reduceByYield.Rd:29: file link 'BamFile' in package 'Rsamtools' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/reduceByYield.Rd:121: file link 'BamFile' in package 'Rsamtools' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4CJqom/R.INSTALL1eac23421eb0/GenomicFiles/man/reduceByYield.Rd:122: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic registry-utils html unpack-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GenomicFiles' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GenomicFiles' as GenomicFiles_1.26.0.zip * DONE (GenomicFiles) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'GenomicFiles' successfully unpacked and MD5 sums checked