Sean Davis
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/GenomicDataCommons |
| Branch: RELEASE_3_12 |
| Last Commit: c08477c |
| Last Changed Date: 2020-10-27 11:23:06 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:28 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the GenomicDataCommons package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 715/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GenomicDataCommons 1.14.0 (landing page) Sean Davis
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: GenomicDataCommons |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GenomicDataCommons_1.14.0.tar.gz && rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GenomicDataCommons_1.14.0.zip && rm GenomicDataCommons_1.14.0.tar.gz GenomicDataCommons_1.14.0.zip |
| StartedAt: 2021-05-05 18:56:58 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:57:38 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 39.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GenomicDataCommons_1.14.0.tar.gz && rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GenomicDataCommons_1.14.0.zip && rm GenomicDataCommons_1.14.0.tar.gz GenomicDataCommons_1.14.0.zip
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install for i386
* installing *source* package 'GenomicDataCommons' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicDataCommons'
finding HTML links ... done
GenomicDataCommons html
aggregations html
available_expand html
available_fields html
available_values html
constants html
count html
default_fields html
dot-htseq_importer html
entity_name html
expand html
faceting html
field_description html
filtering html
gdc_cache html
gdc_client html
gdc_clinical html
gdc_rnaseq html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpqS0p4Z/R.INSTALL1b306304563b/GenomicDataCommons/man/gdc_rnaseq.Rd:28: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
gdc_token html
gdcdata html
grep_fields html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpqS0p4Z/R.INSTALL1b306304563b/GenomicDataCommons/man/grep_fields.Rd:10: missing link '.gdc_entities'
id_field html
ids html
make_filter html
manifest html
mapping html
query html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpqS0p4Z/R.INSTALL1b306304563b/GenomicDataCommons/man/query.Rd:46: missing link 'facets'
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpqS0p4Z/R.INSTALL1b306304563b/GenomicDataCommons/man/query.Rd:53: missing link 'available_expands'
readDNAcopy html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpqS0p4Z/R.INSTALL1b306304563b/GenomicDataCommons/man/readDNAcopy.Rd:12: file link 'read_tsv' in package 'readr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpqS0p4Z/R.INSTALL1b306304563b/GenomicDataCommons/man/readDNAcopy.Rd:15: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
readHTSeqFile html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpqS0p4Z/R.INSTALL1b306304563b/GenomicDataCommons/man/readHTSeqFile.Rd:16: file link 'read_tsv' in package 'readr' does not exist and so has been treated as a topic
response html
results html
results_all html
select html
slicing html
status html
transfer html
write_manifest html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicDataCommons' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicDataCommons' as GenomicDataCommons_1.14.0.zip
* DONE (GenomicDataCommons)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'GenomicDataCommons' successfully unpacked and MD5 sums checked