Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:35:08 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the GIGSEA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 742/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GIGSEA 1.8.0 (landing page) Shijia Zhu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GIGSEA |
Version: 1.8.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:GIGSEA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings GIGSEA_1.8.0.tar.gz |
StartedAt: 2021-05-06 02:15:01 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 02:16:35 -0400 (Thu, 06 May 2021) |
EllapsedTime: 94.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GIGSEA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:GIGSEA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings GIGSEA_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/GIGSEA.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GIGSEA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GIGSEA’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GIGSEA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed geneSet2Net 11.219 0.902 12.643 geneSet2sparseMatrix 10.564 0.534 11.729 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
GIGSEA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GIGSEA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘GIGSEA’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GIGSEA)
GIGSEA.Rcheck/GIGSEA-Ex.timings
name | user | system | elapsed | |
geneSet2Net | 11.219 | 0.902 | 12.643 | |
geneSet2sparseMatrix | 10.564 | 0.534 | 11.729 | |
gmt2geneSet | 2.673 | 0.044 | 3.284 | |
matrixPval | 0.018 | 0.002 | 0.020 | |
orderedIntersect | 0.062 | 0.005 | 0.066 | |
permutationMultipleLm | 0.032 | 0.002 | 0.033 | |
permutationMultipleLmMatrix | 4.320 | 0.246 | 4.572 | |
permutationSimpleLm | 0.027 | 0.004 | 0.030 | |
permutationSimpleLmMatrix | 1.417 | 0.125 | 1.543 | |
runGIGSEA | 0.000 | 0.000 | 0.001 | |
weightedGSEA | 0.016 | 0.002 | 0.017 | |
weightedMultipleLm | 4.030 | 0.083 | 4.116 | |
weightedPearsonCorr | 0.059 | 0.003 | 0.061 | |