Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:26 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the GENESIS package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 700/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GENESIS 2.20.1 (landing page) Stephanie M. Gogarten
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GENESIS |
Version: 2.20.1 |
Command: rm -rf GENESIS.buildbin-libdir && mkdir GENESIS.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENESIS.buildbin-libdir GENESIS_2.20.1.tar.gz |
StartedAt: 2021-05-06 09:09:34 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 09:10:16 -0400 (Thu, 06 May 2021) |
EllapsedTime: 42.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GENESIS_2.20.1.zip |
PackageFileSize: 3.197 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GENESIS.buildbin-libdir && mkdir GENESIS.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENESIS.buildbin-libdir GENESIS_2.20.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GENESIS' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fht.c -o fht.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o GENESIS.dll tmp.def fht.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/GENESIS.buildbin-libdir/00LOCK-GENESIS/00new/GENESIS/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning in .recacheSubclasses(def@className, def, env) : undefined subclass "numericVector" of class "Mnumeric"; definition not updated ** help *** installing help indices converting help for package 'GENESIS' finding HTML links ... done GENESIS-package html HapMap_ASW_MXL_KINGmat html admixMap html finding level-2 HTML links ... done assocTestAggregate html assocTestSingle html defunct html effectAllele html fitNullModel html jointScoreTest html kin2gds html kingToMatrix html makeSparseMatrix html pcair html pcairPartition html pcrelate html pcrelateToMatrix html plot.pcair html print.pcair html sample_annotation_1KG html varCompCI html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in .recacheSubclasses(def@className, def, env) : undefined subclass "numericVector" of class "Mnumeric"; definition not updated ** testing if installed package can be loaded from final location Warning in .recacheSubclasses(def@className, def, env) : undefined subclass "numericVector" of class "Mnumeric"; definition not updated ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GENESIS' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fht.c -o fht.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GENESIS.dll tmp.def fht.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/GENESIS.buildbin-libdir/GENESIS/libs/x64 ** testing if installed package can be loaded Warning in .recacheSubclasses(def@className, def, env) : undefined subclass "numericVector" of class "Mnumeric"; definition not updated * MD5 sums packaged installation of 'GENESIS' as GENESIS_2.20.1.zip * DONE (GENESIS)