Leandro Roser
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/FastqCleaner |
| Branch: RELEASE_3_12 |
| Last Commit: a2a6837 |
| Last Changed Date: 2020-10-27 11:35:58 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:05 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the FastqCleaner package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 591/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| FastqCleaner 1.8.0 (landing page) Leandro Roser
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: FastqCleaner |
| Version: 1.8.0 |
| Command: rm -rf FastqCleaner.buildbin-libdir && mkdir FastqCleaner.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FastqCleaner.buildbin-libdir FastqCleaner_1.8.0.tar.gz |
| StartedAt: 2021-05-06 09:03:10 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:04:49 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 98.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: FastqCleaner_1.8.0.zip |
| PackageFileSize: 4.329 MiB |
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### Running command:
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### rm -rf FastqCleaner.buildbin-libdir && mkdir FastqCleaner.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FastqCleaner.buildbin-libdir FastqCleaner_1.8.0.tar.gz
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install for i386
* installing *source* package 'FastqCleaner' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_GC_content.cpp -o cpp_GC_content.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_base_content.cpp -o cpp_base_content.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_check_quality_threshold.cpp -o cpp_check_quality_threshold.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_create_stringvec.cpp -o cpp_create_stringvec.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_which_true.cpp -o cpp_which_true.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o FastqCleaner.dll tmp.def RcppExports.o cpp_GC_content.o cpp_base_content.o cpp_check_quality_threshold.o cpp_create_stringvec.o cpp_which_true.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/FastqCleaner.buildbin-libdir/00LOCK-FastqCleaner/00new/FastqCleaner/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'FastqCleaner'
finding HTML links ... done
adapter_filter html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpSCrdiz/R.INSTALL14091b7f94/FastqCleaner/man/adapter_filter.Rd:16: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
asc2int html
check_encoding html
check_onclick_ html
complex_filter html
create_cleanfunction_ html
create_uniform_width html
fixed_filter html
inject_letter_random html
int2asc html
isNaturalNumber html
launch_fqc html
length_filter html
matching html
messageFun_ html
myPlot html
n_filter html
outputClean_ html
plotA html
plotB html
plotC html
plotD html
plotE html
plotF html
plotG html
plotH html
plotI html
plotJ html
plotObjects html
processingFunction_ html
qmean_filter html
random_length html
random_qual html
random_seq html
seq_filter html
seq_names html
trim3q_filter html
unique_filter html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FastqCleaner' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_GC_content.cpp -o cpp_GC_content.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_base_content.cpp -o cpp_base_content.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_check_quality_threshold.cpp -o cpp_check_quality_threshold.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_create_stringvec.cpp -o cpp_create_stringvec.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I../inst/include/ -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp_which_true.cpp -o cpp_which_true.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o FastqCleaner.dll tmp.def RcppExports.o cpp_GC_content.o cpp_base_content.o cpp_check_quality_threshold.o cpp_create_stringvec.o cpp_which_true.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/FastqCleaner.buildbin-libdir/FastqCleaner/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FastqCleaner' as FastqCleaner_1.8.0.zip
* DONE (FastqCleaner)