Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:27:38 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the FRGEpistasis package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 649/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
FRGEpistasis 1.26.0 (landing page) Futao Zhang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: FRGEpistasis |
Version: 1.26.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:FRGEpistasis.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings FRGEpistasis_1.26.0.tar.gz |
StartedAt: 2021-05-06 01:40:14 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 01:42:33 -0400 (Thu, 06 May 2021) |
EllapsedTime: 139.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: FRGEpistasis.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:FRGEpistasis.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings FRGEpistasis_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/FRGEpistasis.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘FRGEpistasis/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘FRGEpistasis’ version ‘1.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘FRGEpistasis’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed pCAPiontwiseEpistasis 81.68 0.004 81.803 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.12-bioc/meat/FRGEpistasis.Rcheck/00check.log’ for details.
FRGEpistasis.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL FRGEpistasis ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘FRGEpistasis’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FRGEpistasis)
FRGEpistasis.Rcheck/FRGEpistasis-Ex.timings
name | user | system | elapsed | |
fRGEpistasis | 2.256 | 0.032 | 2.472 | |
fRGInteraction | 0.000 | 0.000 | 0.003 | |
fourierExpansion | 0.128 | 0.016 | 0.143 | |
frgEpistasisTest | 1.196 | 0.016 | 1.216 | |
innerEpi | 0.016 | 0.004 | 0.017 | |
innerSnpListInteraction | 0.012 | 0.000 | 0.013 | |
logTransPheno | 0 | 0 | 0 | |
outerEpi | 0.152 | 0.000 | 0.152 | |
outerSnpListInteraction | 0.016 | 0.000 | 0.017 | |
pCAInteraction | 0.852 | 0.004 | 0.861 | |
pCAPiontwiseEpistasis | 81.680 | 0.004 | 81.803 | |
pointwiseInteraction | 0.180 | 0.000 | 0.182 | |
rankTransPheno | 0.004 | 0.000 | 0.001 | |
reduceGeno | 0.432 | 0.000 | 0.432 | |
snpPairInteraction | 0.000 | 0.000 | 0.001 | |