Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:34:51 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the DSS package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 513/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DSS 2.38.0 (landing page) Hao Wu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: DSS |
Version: 2.38.0 |
Command: rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DSS_2.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DSS.buildbin-libdir |
StartedAt: 2021-05-06 08:28:44 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 08:29:32 -0400 (Thu, 06 May 2021) |
EllapsedTime: 47.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: DSS_2.38.0.tgz |
PackageFileSize: 1.591 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DSS_2.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DSS.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DSS.buildbin-libdir DSS_2.38.0.tar.gz' >>>>>>> * installing *source* package ‘DSS’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c compute_var_smooth.c -o compute_var_smooth.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c filter.c -o filter.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c nitem.c -o nitem.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DSS.so compute_var_smooth.o filter.o nitem.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.12-bioc/meat/DSS.buildbin-libdir/00LOCK-DSS/00new/DSS/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DSS) >>>>>>> >>>>>>> FIXING LINKS FOR DSS.buildbin-libdir/DSS/libs/DSS.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "DSS.buildbin-libdir/DSS/libs/DSS.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "DSS.buildbin-libdir/DSS/libs/DSS.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "DSS.buildbin-libdir/DSS/libs/DSS.so"