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This page was generated on 2021-05-06 12:27:18 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the DEComplexDisease package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 438/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DEComplexDisease 1.10.0 (landing page) Guofeng Meng
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: DEComplexDisease |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:DEComplexDisease.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings DEComplexDisease_1.10.0.tar.gz |
StartedAt: 2021-05-06 00:43:48 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 00:48:08 -0400 (Thu, 06 May 2021) |
EllapsedTime: 259.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DEComplexDisease.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:DEComplexDisease.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings DEComplexDisease_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/DEComplexDisease.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DEComplexDisease/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DEComplexDisease’ version ‘1.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DEComplexDisease’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: Plot.cluster.module.Rd:53-55: Dropping empty section \references prepare_Rd: Plot.deg.specific.test.Rd:43-45: Dropping empty section \references prepare_Rd: module.curve.Rd:27-29: Dropping empty section \references prepare_Rd: summarize.cluster.module.Rd:30-32: Dropping empty section \references prepare_Rd: summarize.seed.module.Rd:31-33: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed bi.deg 23.924 0.260 24.226 Plot.cluster.module 6.640 0.088 6.740 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.12-bioc/meat/DEComplexDisease.Rcheck/00check.log’ for details.
DEComplexDisease.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL DEComplexDisease ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘DEComplexDisease’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c sig.cpp -o sig.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o DEComplexDisease.so RcppExports.o sig.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-DEComplexDisease/00new/DEComplexDisease/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘decd.Rmd’ ‘vignettes.Rmd’ ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DEComplexDisease)
DEComplexDisease.Rcheck/DEComplexDisease-Ex.timings
name | user | system | elapsed | |
Plot.cluster.module | 6.640 | 0.088 | 6.740 | |
Plot.deg | 1.260 | 0.004 | 1.266 | |
Plot.deg.specific | 0.588 | 0.016 | 0.604 | |
Plot.deg.specific.test | 0.524 | 0.000 | 0.526 | |
Plot.seed.module | 0.368 | 0.000 | 0.370 | |
bi.deg | 23.924 | 0.260 | 24.226 | |
cluster.module | 2.388 | 0.004 | 2.393 | |
deg.specific | 2.288 | 0.004 | 2.293 | |
module.compare | 0.232 | 0.000 | 0.235 | |
module.curve | 0.024 | 0.000 | 0.025 | |
module.exact | 0.000 | 0.000 | 0.002 | |
module.modeling | 1.492 | 0.000 | 1.495 | |
module.overlap | 0.584 | 0.000 | 0.582 | |
module.screen | 0.332 | 0.004 | 0.336 | |
seed.module | 4.936 | 0.000 | 4.938 | |
summarize.cluster.module | 0.008 | 0.000 | 0.007 | |
summarize.deg.specific | 0.008 | 0.000 | 0.010 | |
summarize.seed.module | 0.008 | 0.000 | 0.009 | |