Back to Multiple platform build/check report for BioC 3.12
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for CorMut on malbec1

This page was generated on 2021-05-06 12:27:15 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the CorMut package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 381/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CorMut 1.32.0  (landing page)
Zhenpeng Li
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/CorMut
Branch: RELEASE_3_12
Last Commit: 0f7f826
Last Changed Date: 2020-10-27 10:46:32 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    ERROR  skipped
tokay1Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: CorMut
Version: 1.32.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CorMut
StartedAt: 2021-05-05 18:26:49 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:27:00 -0400 (Wed, 05 May 2021)
EllapsedTime: 11.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CorMut
###
##############################################################################
##############################################################################


* checking for file ‘CorMut/DESCRIPTION’ ... OK
* preparing ‘CorMut’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CorMut.Rnw’ using Sweave
Loading required package: seqinr
Loading required package: igraph

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

Warning: Package 'CorMut' is deprecated and will be removed from Bioconductor
  version 3.13

Error: processing vignette 'CorMut.Rnw' failed with diagnostics:
 chunk 5 
Error in x - min(x) : non-numeric argument to binary operator

--- failed re-building ‘CorMut.Rnw’

SUMMARY: processing the following file failed:
  ‘CorMut.Rnw’

Error: Vignette re-building failed.
Execution halted