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This page was generated on 2021-05-06 12:34:30 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the CellScore package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 258/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CellScore 1.10.0 (landing page) Nancy Mah
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: CellScore |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CellScore.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CellScore_1.10.0.tar.gz |
StartedAt: 2021-05-06 00:03:54 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 00:10:27 -0400 (Thu, 06 May 2021) |
EllapsedTime: 392.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CellScore.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CellScore.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CellScore_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/CellScore.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CellScore/DESCRIPTION’ ... OK * this is package ‘CellScore’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CellScore’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CellScoreReport 49.387 1.672 51.128 heatmapOnOffMarkers 38.117 0.918 39.087 ScatterplotCellScoreComponents 35.571 1.015 36.630 extractTransitions 34.829 1.090 35.988 RugplotCellScore 34.670 1.062 35.779 PlotCosineSimHeatmap 29.457 0.618 30.142 BoxplotCellScore 24.652 1.119 25.813 CellScore 23.703 0.659 24.393 PcaStandards 21.659 0.469 22.180 CosineSimScore 20.511 0.456 20.997 BarplotOnOff 13.385 1.284 14.750 OnOff 10.678 0.881 11.815 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CellScore.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CellScore ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘CellScore’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CellScore)
CellScore.Rcheck/CellScore-Ex.timings
name | user | system | elapsed | |
BarplotOnOff | 13.385 | 1.284 | 14.750 | |
BoxplotCellScore | 24.652 | 1.119 | 25.813 | |
CellScore | 23.703 | 0.659 | 24.393 | |
CellScoreReport | 49.387 | 1.672 | 51.128 | |
CosineSimScore | 20.511 | 0.456 | 20.997 | |
OnOff | 10.678 | 0.881 | 11.815 | |
PcaStandards | 21.659 | 0.469 | 22.180 | |
PlotCosineSimHeatmap | 29.457 | 0.618 | 30.142 | |
RugplotCellScore | 34.670 | 1.062 | 35.779 | |
ScatterplotCellScoreComponents | 35.571 | 1.015 | 36.630 | |
extractTransitions | 34.829 | 1.090 | 35.988 | |
heatmapOnOffMarkers | 38.117 | 0.918 | 39.087 | |
rugplotDonorTargetTest | 0.000 | 0.001 | 0.001 | |
scatterplotDonorTargetTest | 0.000 | 0.001 | 0.001 | |