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BUILD report for CNVtools on tokay1

This page was generated on 2021-05-06 12:30:25 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the CNVtools package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 344/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVtools 1.84.0  (landing page)
Chris Barnes
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/CNVtools
Branch: RELEASE_3_12
Last Commit: f87965b
Last Changed Date: 2020-10-27 10:36:56 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    ERROR  skipped
tokay1Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: CNVtools
Version: 1.84.0
Command: chmod a+r CNVtools -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNVtools
StartedAt: 2021-05-05 20:17:36 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 20:17:59 -0400 (Wed, 05 May 2021)
EllapsedTime: 23.5 seconds
RetCode: 1
Status:   ERROR   
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r CNVtools -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNVtools
###
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* checking for file 'CNVtools/DESCRIPTION' ... OK
* preparing 'CNVtools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CNVtools-vignette.Rnw' using Sweave
Loading required package: survival
Warning: Package 'CNVtools' is deprecated and will be removed from Bioconductor
  version 3.13
Fitting model  1
	 Iteration 1

Error: processing vignette 'CNVtools-vignette.Rnw' failed with diagnostics:
 chunk 2 (label = model.select) 
Error in CNV.fitModel(ncomp, nind, hyp = "H0", data = data.for.Ccode,  : 
  INTEGER() can only be applied to a 'integer', not a 'character'

--- failed re-building 'CNVtools-vignette.Rnw'

SUMMARY: processing the following file failed:
  'CNVtools-vignette.Rnw'

Error: Vignette re-building failed.
Execution halted