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This page was generated on 2021-05-06 12:30:05 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the BufferedMatrixMethods package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 216/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BufferedMatrixMethods 1.54.0 (landing page) Ben Bolstad
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: BufferedMatrixMethods |
Version: 1.54.0 |
Command: rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.54.0.tar.gz |
StartedAt: 2021-05-06 08:36:21 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 08:37:08 -0400 (Thu, 06 May 2021) |
EllapsedTime: 46.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: BufferedMatrixMethods_1.54.0.zip |
PackageFileSize: 71.92 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.54.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'BufferedMatrixMethods' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init_package.c -o init_package.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c preprocess_bm.c -o preprocess_bm.o preprocess_bm.c: In function 'bm_rma_bg_correct': preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ preprocess_bm.c: In function 'R_bm_rma_bg_correct': preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable] int current_mode; ^~~~~~~~~~~~ preprocess_bm.c: In function 'R_bm_quantile_normalize': preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable] int current_mode; ^~~~~~~~~~~~ preprocess_bm.c: In function 'do_RMA_buffmat': preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable] int first_ind; ^~~~~~~~~ preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize': preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable] int current_mode; ^~~~~~~~~~~~ At top level: preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function] static int min(int x1,int x2){ ^~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BufferedMatrixMethods.buildbin-libdir/00LOCK-BufferedMatrixMethods/00new/BufferedMatrixMethods/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BufferedMatrixMethods' finding HTML links ... done BM_affyDataInput html BM_justRMA html BM_readcelfiles html rmapreprocess.bufferedmatrix html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BufferedMatrixMethods' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init_package.c -o init_package.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c preprocess_bm.c -o preprocess_bm.o preprocess_bm.c: In function 'bm_rma_bg_correct': preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ preprocess_bm.c: In function 'R_bm_rma_bg_correct': preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable] int current_mode; ^~~~~~~~~~~~ preprocess_bm.c: In function 'R_bm_quantile_normalize': preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable] int current_mode; ^~~~~~~~~~~~ preprocess_bm.c: In function 'do_RMA_buffmat': preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable] int first_ind; ^~~~~~~~~ preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize': preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable] int current_mode; ^~~~~~~~~~~~ At top level: preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function] static int min(int x1,int x2){ ^~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BufferedMatrixMethods' as BufferedMatrixMethods_1.54.0.zip * DONE (BufferedMatrixMethods)