Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:27:02 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the BrainSABER package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 203/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BrainSABER 1.0.0 (landing page) USD Biomedical Engineering
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: BrainSABER |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:BrainSABER.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings BrainSABER_1.0.0.tar.gz |
StartedAt: 2021-05-05 23:35:43 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 23:39:28 -0400 (Wed, 05 May 2021) |
EllapsedTime: 224.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BrainSABER.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:BrainSABER.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings BrainSABER_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/BrainSABER.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘BrainSABER/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘BrainSABER’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BrainSABER’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
BrainSABER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL BrainSABER ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘BrainSABER’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BrainSABER)
BrainSABER.Rcheck/BrainSABER-Ex.timings
name | user | system | elapsed | |
CellScabbard-methods | 0.524 | 0.016 | 0.543 | |
CellScabbard | 0.304 | 0.000 | 0.303 | |
buildAIBSARNA | 0.008 | 0.000 | 0.009 | |
getExampleVector | 0.048 | 0.000 | 0.047 | |
getExternalVector | 0.036 | 0.000 | 0.034 | |
getRelevantGenes | 0.224 | 0.000 | 0.224 | |
getSimDataFrame | 0.356 | 0.004 | 0.371 | |
getSimMatrix | 0.420 | 0.000 | 0.423 | |
getSimScores | 0.372 | 0.000 | 0.370 | |
getTrimmedExternalSet | 0.272 | 0.000 | 0.273 | |
getUNDmatrix | 0.264 | 0.000 | 0.263 | |