This page was generated on 2021-05-06 12:34:20 -0400 (Thu, 06 May 2021).
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ArrayTV
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* checking for file ‘ArrayTV/DESCRIPTION’ ... OK
* preparing ‘ArrayTV’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ArrayTV.Rnw’ using Sweave
Warning: Package 'ArrayTV' is deprecated and will be removed from Bioconductor
version 3.13
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: BSgenome
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated,
append, as.data.frame, basename, cbind, colnames, dirname,
do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector
Attaching package: ‘Biostrings’
The following object is masked from ‘package:base’:
strsplit
Loading required package: rtracklayer
Error: processing vignette 'ArrayTV.Rnw' failed with diagnostics:
chunk 6 (label = tvscorefig)
Error in plot.xy(xy, type, ...) : invalid color name 'NimbleGen'
--- failed re-building ‘ArrayTV.Rnw’
SUMMARY: processing the following file failed:
‘ArrayTV.Rnw’
Error: Vignette re-building failed.
Execution halted