Back to Workflows build report for BioC 3.11

BUILD report for maEndToEnd on malbec2

This page was generated on 2020-10-16 17:00:15 -0400 (Fri, 16 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE maEndToEnd PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 15/27HostnameOS / ArchINSTALLBUILD
maEndToEnd 2.8.0
Stefanie Reisenauer
Snapshot Date: 2020-10-16 08:00:02 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/maEndToEnd
Branch: RELEASE_3_11
Last Commit: 7f0ab79
Last Changed Date: 2020-04-27 14:05:25 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK [ ERROR ]

Summary

Package: maEndToEnd
Version: 2.8.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd
StartedAt: 2020-10-16 09:15:43 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 09:19:11 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 207.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd
###
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* checking for file ‘maEndToEnd/DESCRIPTION’ ... OK
* preparing ‘maEndToEnd’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MA-Workflow.Rmd’ using rmarkdown
trying URL 'https://www.ebi.ac.uk/arrayexpress/files/A-AFFY-141/A-AFFY-141.adf.txt'
Content type 'text/plain' length 94175098 bytes (89.8 MB)
=======================
downloaded 42.2 MB

trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt'
Content type 'text/plain' length 22516 bytes (21 KB)
==================================================
downloaded 21 KB

trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2967/E-MTAB-2967.idf.txt'
Content type 'text/plain' length 3407 bytes
==================================================
downloaded 3407 bytes

Copying raw data files

trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2967/E-MTAB-2967.raw.1.zip'
Content type 'application/zip' length 186452879 bytes (177.8 MB)
===============
downloaded 54.5 MB

trying URL 'https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2967/E-MTAB-2967.raw.2.zip'
Content type 'application/zip' length 38447870 bytes (36.7 MB)
==================================================
downloaded 36.7 MB

Unpacking data files
Quitting from lines 255-256 (MA-Workflow.Rmd) 
Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics:
/tmp/RtmpJuue4P/E-MTAB-2967.raw.1.zip  does not exist or is empty. 
 does not exist
--- failed re-building ‘MA-Workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘MA-Workflow.Rmd’

Error: Vignette re-building failed.
Execution halted