| Back to Build/check report for BioC 3.11 experimental data |
This page was generated on 2020-10-15 20:46:02 -0400 (Thu, 15 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE tweeDEseqCountData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 376/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| tweeDEseqCountData 1.26.0 Juan R Gonzalez
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] |
| Package: tweeDEseqCountData |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:tweeDEseqCountData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings tweeDEseqCountData_1.26.0.tar.gz |
| StartedAt: 2020-10-15 14:19:09 -0400 (Thu, 15 Oct 2020) |
| EndedAt: 2020-10-15 14:20:03 -0400 (Thu, 15 Oct 2020) |
| EllapsedTime: 54.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: tweeDEseqCountData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:tweeDEseqCountData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings tweeDEseqCountData_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/tweeDEseqCountData.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tweeDEseqCountData/DESCRIPTION’ ... OK
* this is package ‘tweeDEseqCountData’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tweeDEseqCountData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 41.3Mb
sub-directories of 1Mb or more:
data 41.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
.First.lib: no visible global function definition for ‘.path.package’
Undefined global functions or variables:
.path.package
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.11-data-experiment/meat/tweeDEseqCountData.Rcheck/00check.log’
for details.
tweeDEseqCountData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL tweeDEseqCountData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘tweeDEseqCountData’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tweeDEseqCountData)
tweeDEseqCountData.Rcheck/tweeDEseqCountData-Ex.timings
| name | user | system | elapsed | |
| annotEnsembl63 | 0.404 | 0.004 | 0.419 | |
| cheung | 0.344 | 0.016 | 0.369 | |
| commonPickrell1Huang | 1.021 | 0.040 | 1.443 | |
| genderGenes | 0.000 | 0.001 | 0.002 | |
| hkGenes | 0.004 | 0.002 | 0.005 | |
| montgomery | 0.362 | 0.015 | 0.461 | |
| pickrell | 0.613 | 0.024 | 0.637 | |