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INSTALL report for illuminaio on tokay2

This page was generated on 2020-04-15 03:20:12 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE illuminaio PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 48/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
illuminaio 0.29.0
Kasper Daniel Hansen
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/illuminaio
Branch: master
Last Commit: 3e99732
Last Changed Date: 2019-10-29 13:36:26 -0400 (Tue, 29 Oct 2019)
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 

Summary

Package: illuminaio
Version: 0.29.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/illuminaio_0.29.0.tar.gz && rm -rf illuminaio.buildbin-libdir && mkdir illuminaio.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=illuminaio.buildbin-libdir illuminaio_0.29.0.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL illuminaio_0.29.0.zip && rm illuminaio_0.29.0.tar.gz illuminaio_0.29.0.zip
StartedAt: 2020-04-14 17:42:41 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 17:42:56 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 15.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/illuminaio_0.29.0.tar.gz && rm -rf illuminaio.buildbin-libdir && mkdir illuminaio.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=illuminaio.buildbin-libdir illuminaio_0.29.0.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL illuminaio_0.29.0.zip && rm illuminaio_0.29.0.tar.gz illuminaio_0.29.0.zip
###
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install for i386

* installing *source* package 'illuminaio' ...
** using staged installation
** libs
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c 000.init.c -o 000.init.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c des.c -o des.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c local_des.c -o local_des.o
/mingw32/bin/gcc -shared -s -static-libgcc -o illuminaio.dll tmp.def 000.init.o des.o local_des.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/illuminaio.buildbin-libdir/00LOCK-illuminaio/00new/illuminaio/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'illuminaio'
    finding HTML links ... done
    readBGX                                 html  
    readBPM                                 html  
    readIDAT                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'illuminaio' ...
** libs
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c 000.init.c -o 000.init.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c des.c -o des.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c local_des.c -o local_des.o
/mingw64/bin/gcc -shared -s -static-libgcc -o illuminaio.dll tmp.def 000.init.o des.o local_des.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/illuminaio.buildbin-libdir/illuminaio/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'illuminaio' as illuminaio_0.29.0.zip
* DONE (illuminaio)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'illuminaio' successfully unpacked and MD5 sums checked