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###
### Running command:
###
###   chmod a+r graph -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data graph
###
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* checking for file 'graph/DESCRIPTION' ... OK
* preparing 'graph':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'GraphClass.Rnw' using Sweave
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "GraphClass.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'GraphClass.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'GraphClass.pdf' for vignette with name 'GraphClass' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\Rtmp86gFua\Rbuild15a81353754e\graph\vignettes': 'GraphClass.Rnw' (11873 bytes), 'GraphClass.tex' (12833 bytes), 'MultiGraphClass.Rnw' (18677 bytes), 'clusterGraph.Rnw' (3136 bytes), 'graph.Rnw' (14630 bytes), 'graphAttributes.Rnw' (6072 bytes)
--- failed re-building 'GraphClass.Rnw'

--- re-building 'MultiGraphClass.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "MultiGraphClass.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'MultiGraphClass.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'MultiGraphClass.pdf' for vignette with name 'MultiGraphClass' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\Rtmp86gFua\Rbuild15a81353754e\graph\vignettes': 'GraphClass.R' (413 bytes), 'GraphClass.Rnw' (11873 bytes), 'GraphClass.tex' (12833 bytes), 'MultiGraphClass.Rnw' (18677 bytes), 'MultiGraphClass.tex' (24324 bytes), 'clusterGraph.Rnw' (3136 bytes), 'graph.Rnw' (14630 bytes), 'graphAttributes.Rnw' (6072 bytes)
--- failed re-building 'MultiGraphClass.Rnw'

--- re-building 'clusterGraph.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "clusterGraph.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'clusterGraph.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'clusterGraph.pdf' for vignette with name 'clusterGraph' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\Rtmp86gFua\Rbuild15a81353754e\graph\vignettes': 'GraphClass.R' (413 bytes), 'GraphClass.Rnw' (11873 bytes), 'GraphClass.tex' (12833 bytes), 'MultiGraphClass.R' (8801 bytes), 'MultiGraphClass.Rnw' (18677 bytes), 'MultiGraphClass.tex' (24324 bytes), 'clusterGraph.Rnw' (3136 bytes), 'clusterGraph.tex' (3811 bytes), 'graph.Rnw' (14630 bytes), 'graphAttributes.Rnw' (6072 bytes)
--- failed re-building 'clusterGraph.Rnw'

--- re-building 'graph.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "graph.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'graph.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'graph.pdf' for vignette with name 'graph' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\Rtmp86gFua\Rbuild15a81353754e\graph\vignettes': 'GraphClass.R' (413 bytes), 'GraphClass.Rnw' (11873 bytes), 'GraphClass.tex' (12833 bytes), 'MultiGraphClass.R' (8801 bytes), 'MultiGraphClass.Rnw' (18677 bytes), 'MultiGraphClass.tex' (24324 bytes), 'clusterGraph.R' (1386 bytes), 'clusterGraph.Rnw' (3136 bytes), 'clusterGraph.tex' (3811 bytes), 'graph.Rnw' (14630 bytes), 'graph.tex' (19325 bytes), 'graphAttributes.Rnw' (6072 bytes)
--- failed re-building 'graph.Rnw'

--- re-building 'graphAttributes.Rnw' using Sweave
Loading required package: Rgraphviz
Loading required package: grid
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "graphAttributes.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'graphAttributes.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'graphAttributes.pdf' for vignette with name 'graphAttributes' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\Rtmp86gFua\Rbuild15a81353754e\graph\vignettes': 'GraphClass.R' (413 bytes), 'GraphClass.Rnw' (11873 bytes), 'GraphClass.tex' (12833 bytes), 'MultiGraphClass.R' (8801 bytes), 'MultiGraphClass.Rnw' (18677 bytes), 'MultiGraphClass.tex' (24324 bytes), 'clusterGraph.R' (1386 bytes), 'clusterGraph.Rnw' (3136 bytes), 'clusterGraph.tex' (3811 bytes), 'foo.pdf' (4559 bytes), 'graph.R' (3700 bytes), 'graph.Rnw' (14630 bytes), 'graph.tex' (19325 bytes), 'graphAttributes.Rnw' (6072 bytes), 'graphAttributes.tex' (7959 bytes)
--- failed re-building 'graphAttributes.Rnw'

SUMMARY: processing the following files failed:
  'GraphClass.Rnw' 'MultiGraphClass.Rnw' 'clusterGraph.Rnw' 'graph.Rnw'
  'graphAttributes.Rnw'

Error: Vignette re-building failed.
Execution halted