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### Running command:
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###   chmod a+r geneplotter -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data geneplotter
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* checking for file 'geneplotter/DESCRIPTION' ... OK
* preparing 'geneplotter':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'byChroms.Rnw' using Sweave
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: XML
Loading required package: org.Hs.eg.db


Loading required package: lattice
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "byChroms.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'byChroms.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'byChroms.pdf' for vignette with name 'byChroms' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpCMdSyb\Rbuild171c5dce4e78\geneplotter\vignettes': 'byChroms-cPlot.pdf' (62685 bytes), 'byChroms.Rnw' (2844 bytes), 'byChroms.tex' (3895 bytes), 'visualize.Rnw' (4938 bytes)
--- failed re-building 'byChroms.Rnw'

--- re-building 'visualize.Rnw' using Sweave

Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "visualize.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'visualize.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'visualize.pdf' for vignette with name 'visualize' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpCMdSyb\Rbuild171c5dce4e78\geneplotter\vignettes': 'byChroms-cPlot.pdf' (62685 bytes), 'byChroms.R' (1264 bytes), 'byChroms.Rnw' (2844 bytes), 'byChroms.tex' (3895 bytes), 'visualize-f11.pdf' (189427 bytes), 'visualize-f22.pdf' (5037 bytes), 'visualize.Rnw' (4938 bytes), 'visualize.tex' (4708 bytes)
--- failed re-building 'visualize.Rnw'

SUMMARY: processing the following files failed:
  'byChroms.Rnw' 'visualize.Rnw'

Error: Vignette re-building failed.
Execution halted