Back to "Blame Jeroen" build/check report for BioC 3.11

BUILD report for cytolib on tokay2

This page was generated on 2020-04-15 03:20:15 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE cytolib PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 25/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cytolib 1.99.27
Mike Jiang
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/cytolib
Branch: master
Last Commit: 85cb140
Last Changed Date: 2020-04-08 15:34:04 -0400 (Wed, 08 Apr 2020)
tokay2 Windows Server 2012 R2 Standard / x64  ERROR [ ERROR ] skipped  skipped 

Summary

Package: cytolib
Version: 1.99.27
Command: chmod a+r cytolib -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cytolib
StartedAt: 2020-04-14 20:10:50 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:15:46 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 295.9 seconds
RetCode: 1
Status:  ERROR  
PackageFile: cytolib_1.99.27.tar.gz
PackageFileSize: 7.301 MiB

Command output

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###
### Running command:
###
###   chmod a+r cytolib -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cytolib
###
##############################################################################
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* checking for file 'cytolib/DESCRIPTION' ... OK
* preparing 'cytolib':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running 'cleanup.win'
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'cytolib' ...
** using staged installation
** preparing to configure package 'cytolib' ...
*** configured file: 'cytolibConfig.h.in' => 'inst/include/cytolib/cytolibConfig.h'
** finished configure for package 'cytolib'
** libs
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/system/src/error_code.cpp -o boost/libs/system/src/error_code.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/portability.cpp -o boost/libs/filesystem/src/portability.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/path.hpp:29,
                 from boost/libs/filesystem/src/portability.cpp:17:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/unique_path.cpp -o boost/libs/filesystem/src/unique_path.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/path.hpp:29,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/operations.hpp:25,
                 from boost/libs/filesystem/src/unique_path.cpp:16:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/operations.cpp -o boost/libs/filesystem/src/operations.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/path.hpp:29,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/operations.hpp:25,
                 from boost/libs/filesystem/src/operations.cpp:71:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/path.cpp -o boost/libs/filesystem/src/path.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/path.hpp:29,
                 from boost/libs/filesystem/src/path.cpp:28:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/directory.cpp -o boost/libs/filesystem/src/directory.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/path.hpp:29,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/directory.hpp:26,
                 from boost/libs/filesystem/src/directory.cpp:28:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/exception.cpp -o boost/libs/filesystem/src/exception.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/filesystem/path.hpp:29,
                 from boost/libs/filesystem/src/exception.cpp:13:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/windows_file_codecvt.cpp -o boost/libs/filesystem/src/windows_file_codecvt.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/utf8_codecvt_facet.cpp -o boost/libs/filesystem/src/utf8_codecvt_facet.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/codecvt_error_category.cpp -o boost/libs/filesystem/src/codecvt_error_category.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/path_traits.cpp -o boost/libs/filesystem/src/path_traits.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CytoFrame.cpp -o CytoFrame.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from CytoFrame.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CytoFrameView.cpp -o CytoFrameView.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from ../inst/include/cytolib/MemCytoFrame.hpp:12,
                 from ../inst/include/cytolib/CytoFrameView.hpp:12,
                 from CytoFrameView.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c GatingHierarchy.cpp -o GatingHierarchy.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from ../inst/include/cytolib/MemCytoFrame.hpp:12,
                 from ../inst/include/cytolib/gate.hpp:12,
                 from ../inst/include/cytolib/POPINDICES.hpp:14,
                 from ../inst/include/cytolib/nodeProperties.hpp:13,
                 from ../inst/include/cytolib/populationTree.hpp:13,
                 from ../inst/include/cytolib/GatingHierarchy.hpp:17,
                 from GatingHierarchy.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c GatingSet.cpp -o GatingSet.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from ../inst/include/cytolib/MemCytoFrame.hpp:12,
                 from ../inst/include/cytolib/gate.hpp:12,
                 from ../inst/include/cytolib/POPINDICES.hpp:14,
                 from ../inst/include/cytolib/nodeProperties.hpp:13,
                 from ../inst/include/cytolib/populationTree.hpp:13,
                 from ../inst/include/cytolib/GatingHierarchy.hpp:17,
                 from ../inst/include/cytolib/GatingSet.hpp:14,
                 from GatingSet.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c GatingSet.pb.cc -o GatingSet.pb.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c H5CytoFrame.cpp -o H5CytoFrame.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from ../inst/include/cytolib/MemCytoFrame.hpp:12,
                 from ../inst/include/cytolib/H5CytoFrame.hpp:12,
                 from H5CytoFrame.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c MemCytoFrame.cpp -o MemCytoFrame.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from ../inst/include/cytolib/MemCytoFrame.hpp:12,
                 from MemCytoFrame.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
MemCytoFrame.cpp: In member function 'void cytolib::MemCytoFrame::read_fcs_data(std::ifstream&, const cytolib::FCS_READ_DATA_PARAM&)':
MemCytoFrame.cpp:722:4: warning: 'scale' may be used uninitialized in this function [-Wmaybe-uninitialized]
    if(scale)
    ^~
MemCytoFrame.cpp:751:4: warning: 'isTransformation' may be used uninitialized in this function [-Wmaybe-uninitialized]
    if(isTransformation)
    ^~
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c POPINDICES.cpp -o POPINDICES.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from ../inst/include/cytolib/MemCytoFrame.hpp:12,
                 from ../inst/include/cytolib/gate.hpp:12,
                 from ../inst/include/cytolib/POPINDICES.hpp:14,
                 from POPINDICES.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c calibrationTable.cpp -o calibrationTable.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/foreach.hpp:76,
                 from calibrationTable.cpp:5:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c compensation.cpp -o compensation.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from compensation.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c ellipse2points.cpp -o ellipse2points.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gate.cpp -o gate.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from ../inst/include/cytolib/MemCytoFrame.hpp:12,
                 from ../inst/include/cytolib/gate.hpp:12,
                 from gate.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from gate.cpp:3:
../inst/include/cytolib/gate.hpp: In member function 'virtual INDICE_TYPE cytolib::rectGate::gating(cytolib::MemCytoFrame&, INDICE_TYPE&)':
../inst/include/cytolib/gate.hpp:296:14: warning: 'inY' may be used uninitialized in this function [-Wmaybe-uninitialized]
     bool inX,inY;
              ^~~
../inst/include/cytolib/gate.hpp:296:10: warning: 'inX' may be used uninitialized in this function [-Wmaybe-uninitialized]
     bool inX,inY;
          ^~~
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c global.cpp -o global.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from global.cpp:8:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c in_polygon.cpp -o in_polygon.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c nodeProperties.cpp -o nodeProperties.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/compensation.hpp:15,
                 from ../inst/include/cytolib/CytoFrame.hpp:16,
                 from ../inst/include/cytolib/MemCytoFrame.hpp:12,
                 from ../inst/include/cytolib/gate.hpp:12,
                 from ../inst/include/cytolib/POPINDICES.hpp:14,
                 from ../inst/include/cytolib/nodeProperties.hpp:13,
                 from nodeProperties.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from ../inst/include/cytolib/POPINDICES.hpp:14,
                 from ../inst/include/cytolib/nodeProperties.hpp:13,
                 from nodeProperties.cpp:3:
../inst/include/cytolib/gate.hpp: In member function 'virtual INDICE_TYPE cytolib::quadGate::gating(cytolib::MemCytoFrame&, INDICE_TYPE&)':
../inst/include/cytolib/gate.hpp:296:14: warning: 'inY' may be used uninitialized in this function [-Wmaybe-uninitialized]
     bool inX,inY;
              ^~~
../inst/include/cytolib/gate.hpp:296:10: warning: 'inX' may be used uninitialized in this function [-Wmaybe-uninitialized]
     bool inX,inY;
          ^~~
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c spline.cpp -o spline.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c trans_group.cpp -o trans_group.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from ../inst/include/cytolib/trans_group.hpp:13,
                 from trans_group.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -Wno-deprecated-declarations -DBOOST_NO_AUTO_PTR -Wno-unknown-pragmas -Wno-comment  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rhdf5lib/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppArmadillo/include' -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c transformation.cpp -o transformation.o
In file included from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/range/as_literal.hpp:22,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from ../inst/include/cytolib/transformation.hpp:18,
                 from transformation.cpp:3:
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
mkdir -p "C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpySPCDa/Rinst18146e7f577/00LOCK-cytolib/00new/cytolib/lib/x64"
/mingw64/bin/ar rs "C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpySPCDa/Rinst18146e7f577/00LOCK-cytolib/00new/cytolib/lib/x64/libcytolib.a" CytoFrame.o CytoFrameView.o GatingHierarchy.o GatingSet.o GatingSet.pb.o H5CytoFrame.o MemCytoFrame.o POPINDICES.o calibrationTable.o compensation.o ellipse2points.o gate.o global.o in_polygon.o nodeProperties.o spline.o trans_group.o transformation.o boost/libs/filesystem/src/portability.o boost/libs/filesystem/src/unique_path.o boost/libs/filesystem/src/operations.o boost/libs/filesystem/src/path.o boost/libs/filesystem/src/directory.o boost/libs/filesystem/src/exception.o boost/libs/filesystem/src/windows_file_codecvt.o boost/libs/filesystem/src/utf8_codecvt_facet.o boost/libs/filesystem/src/codecvt_error_category.o boost/libs/filesystem/src/path_traits.o boost/libs/system/src/error_code.o
C:\rtools40\mingw64\bin\ar.exe: creating C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpySPCDa/Rinst18146e7f577/00LOCK-cytolib/00new/cytolib/lib/x64/libcytolib.a
/mingw64/bin/g++ -shared -s -static-libgcc -o cytolib.dll tmp.def CytoFrame.o CytoFrameView.o GatingHierarchy.o GatingSet.o GatingSet.pb.o H5CytoFrame.o MemCytoFrame.o POPINDICES.o calibrationTable.o compensation.o ellipse2points.o gate.o global.o in_polygon.o nodeProperties.o spline.o trans_group.o transformation.o boost/libs/filesystem/src/portability.o boost/libs/filesystem/src/unique_path.o boost/libs/filesystem/src/operations.o boost/libs/filesystem/src/path.o boost/libs/filesystem/src/directory.o boost/libs/filesystem/src/exception.o boost/libs/filesystem/src/windows_file_codecvt.o boost/libs/filesystem/src/utf8_codecvt_facet.o boost/libs/filesystem/src/codecvt_error_category.o boost/libs/filesystem/src/path_traits.o boost/libs/system/src/error_code.o -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RProtoBufLib/lib/x64/libprotobuf-lite.a -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/library/Rhdf5lib/lib/x64 -lhdf5_cpp -lhdf5 -lszip -lz -lpsapi -LC:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -lws2_32 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.o:GatingSet.cpp:(.text+0x52a6): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.o:GatingSet.cpp:(.text+0x52ba): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.o:GatingSet.cpp:(.text+0x612d): undefined reference to `google::protobuf::io::StringOutputStream::StringOutputStream(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.o:GatingSet.cpp:(.text+0x6414): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Add()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.o:GatingSet.cpp:(.text+0x691e): undefined reference to `google::protobuf::io::StringOutputStream::StringOutputStream(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.o:GatingSet.cpp:(.rdata$.refptr._ZN6google8protobuf8internal26fixed_address_empty_stringB5cxx11E[.refptr._ZN6google8protobuf8internal26fixed_address_empty_stringB5cxx11E]+0x0): undefined reference to `google::protobuf::internal::fixed_address_empty_string[abi:cxx11]'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xc59): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xc63): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xc7e): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xd95): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xd9f): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xdbb): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xef5): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xeff): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xf1b): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x11c5): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x11cf): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x11eb): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x257a): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x26a4): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x282e): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x3117): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x35e8): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x3bcc): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x3c64): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x4246): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x4486): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Add()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x4495): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x4617): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x484f): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x4866): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x494f): undefined reference to `google::protobuf::io::EpsCopyOutputStream::WriteStringOutline(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x4a6c): undefined reference to `google::protobuf::io::EpsCopyOutputStream::WriteStringMaybeAliasedOutline(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x4b8c): undefined reference to `google::protobuf::io::EpsCopyOutputStream::WriteStringMaybeAliasedOutline(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x4c7c): undefined reference to `google::protobuf::io::EpsCopyOutputStream::WriteStringMaybeAliasedOutline(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x53ff): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x5416): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x54ff): undefined reference to `google::protobuf::io::EpsCopyOutputStream::WriteStringOutline(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x6b53): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x6b66): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x6c1f): undefined reference to `google::protobuf::io::EpsCopyOutputStream::WriteStringOutline(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x7b0f): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x7b26): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x7c0f): undefined reference to `google::protobuf::io::EpsCopyOutputStream::WriteStringOutline(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x7ffe): undefined reference to `google::protobuf::internal::InitializeEnumStrings(google::protobuf::internal::EnumEntry const*, int const*, unsigned long long, google::protobuf::internal::ExplicitlyConstructed<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x811e): undefined reference to `google::protobuf::internal::InitializeEnumStrings(google::protobuf::internal::EnumEntry const*, int const*, unsigned long long, google::protobuf::internal::ExplicitlyConstructed<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x823e): undefined reference to `google::protobuf::internal::InitializeEnumStrings(google::protobuf::internal::EnumEntry const*, int const*, unsigned long long, google::protobuf::internal::ExplicitlyConstructed<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x835e): undefined reference to `google::protobuf::internal::InitializeEnumStrings(google::protobuf::internal::EnumEntry const*, int const*, unsigned long long, google::protobuf::internal::ExplicitlyConstructed<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xa942): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xa995): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xadc2): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xadf8): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xc292): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xc2f4): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xc882): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xc927): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xd0b5): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Add()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xd0c4): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xd519): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xd910): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xdb46): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Add()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xdb55): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xe211): undefined reference to `google::protobuf::internal::WriteVarint(unsigned int, unsigned long long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xe2ea): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xeaed): undefined reference to `google::protobuf::internal::WriteVarint(unsigned int, unsigned long long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xf1d5): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xf26a): undefined reference to `google::protobuf::internal::WriteVarint(unsigned int, unsigned long long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xf7b1): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xfb43): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xfd36): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xff1d): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Add()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0xff34): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x101d0): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x10352): undefined reference to `google::protobuf::internal::WriteVarint(unsigned int, unsigned long long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x10813): undefined reference to `google::protobuf::internal::InlineGreedyStringParser(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, char const*, google::protobuf::internal::ParseContext*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x12f3d): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Clear()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x1342d): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Clear()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x1442e): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::MergeFrom(google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x1451b): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::RepeatedPtrField(google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x14588): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x1561d): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Clear()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x159ef): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Clear()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x16322): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::MergeFrom(google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x1658d): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::RepeatedPtrField(google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x16709): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x174bf): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::MergeFrom(google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x1772d): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::RepeatedPtrField(google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x17808): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x1943d): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::RepeatedPtrField(google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x19639): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::~RepeatedPtrField()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text+0x196a5): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::MergeFrom(google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.text$_ZN6google8protobuf2io19EpsCopyOutputStream23WriteStringMaybeAliasedEjRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPh[_ZN6google8protobuf2io19EpsCopyOutputStream23WriteStringMaybeAliasedEjRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPh]+0xe6): undefined reference to `google::protobuf::io::EpsCopyOutputStream::WriteStringMaybeAliasedOutline(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.rdata$_ZTVN2pb10paramRangeE[_ZTVN2pb10paramRangeE]+0x58): undefined reference to `google::protobuf::MessageLite::InitializationErrorString[abi:cxx11]() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.rdata$_ZTVN2pb9rangeGateE[_ZTVN2pb9rangeGateE]+0x58): undefined reference to `google::protobuf::MessageLite::InitializationErrorString[abi:cxx11]() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.rdata$_ZTVN2pb9paramPolyE[_ZTVN2pb9paramPolyE]+0x58): undefined reference to `google::protobuf::MessageLite::InitializationErrorString[abi:cxx11]() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.rdata$_ZTVN2pb11polygonGateE[_ZTVN2pb11polygonGateE]+0x58): undefined reference to `google::protobuf::MessageLite::InitializationErrorString[abi:cxx11]() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.rdata$_ZTVN2pb10coordinateE[_ZTVN2pb10coordinateE]+0x58): undefined reference to `google::protobuf::MessageLite::InitializationErrorString[abi:cxx11]() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: GatingSet.pb.o:GatingSet.pb.cc:(.rdata$_ZTVN2pb11ellipseGateE[_ZTVN2pb11ellipseGateE]+0x58): more undefined references to `google::protobuf::MessageLite::InitializationErrorString[abi:cxx11]() const' follow
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: compensation.o:compensation.cpp:(.text+0x194): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Add()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: compensation.o:compensation.cpp:(.text+0x8ab): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: compensation.o:compensation.cpp:(.text+0x8b9): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: gate.o:gate.cpp:(.text+0x3b5): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Add()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: gate.o:gate.cpp:(.text+0x654): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Add()'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: gate.o:gate.cpp:(.text+0x4862): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: gate.o:gate.cpp:(.text+0x4870): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: gate.o:gate.cpp:(.text+0x60b2): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::size() const'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: gate.o:gate.cpp:(.text+0x60c4): undefined reference to `google::protobuf::RepeatedPtrField<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >::Get(int) const'
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'cytolib'
* removing 'C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpySPCDa/Rinst18146e7f577/cytolib'
      -----------------------------------
ERROR: package installation failed