##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r biovizBase -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data biovizBase
###
##############################################################################
##############################################################################


* checking for file 'biovizBase/DESCRIPTION' ... OK
* preparing 'biovizBase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'intro.Rnw' using Sweave
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames,
    sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "intro.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'intro.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'intro.pdf' for vignette with name 'intro' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpeqTPg9\Rbuild1510559a7639\biovizBase\vignettes': 'intro-color-dichromat.pdf' (4290 bytes), 'intro-cytoband-color-legend.pdf' (5851 bytes), 'intro-ne-dichromat.pdf' (4242 bytes), 'intro-shrink-single.pdf' (5344 bytes), 'intro-shrinkageFun.pdf' (5690 bytes), 'intro-strand-color.pdf' (4203 bytes), 'intro.Rnw' (35822 bytes), 'intro.tex' (54596 bytes)
--- failed re-building 'intro.Rnw'

SUMMARY: processing the following file failed:
  'intro.Rnw'

Error: Vignette re-building failed.
Execution halted