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### Running command:
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###   chmod a+r affy -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data affy
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* checking for file 'affy/DESCRIPTION' ... OK
* preparing 'affy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'affy.Rnw' using Sweave
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'hgu95av2cdf'
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'hgu95av2cdf'

Warning in KernSmooth::bkde2D(x, bandwidth = bandwidth, gridsize = nbin,  :
  Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "affy.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'affy.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'affy.pdf' for vignette with name 'affy' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpeSilHK\Rbuild12042f7a468c\affy\vignettes': 'EWSnap.png' (49863 bytes), 'affy-011.pdf' (406214 bytes), 'affy-016.pdf' (10506 bytes), 'affy-018.pdf' (4753 bytes), 'affy-021.pdf' (4713 bytes), 'affy-027.pdf' (7619 bytes), 'affy.Rnw' (35600 bytes), 'affy.bib' (11283 bytes), 'affy.tex' (45577 bytes), 'builtinMethods.Rnw' (10608 bytes), 'customMethods.Rnw' (6002 bytes), 'image.png' (60237 bytes), 'vim.Rnw' (3478 bytes), 'widget1.ps' (1.35256e+06 bytes), 'widget2.ps' (1.29668e+06 bytes), 'widgetfilechooser.png' (13403 bytes)
--- failed re-building 'affy.Rnw'

--- re-building 'builtinMethods.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "builtinMethods.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'builtinMethods.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'builtinMethods.pdf' for vignette with name 'builtinMethods' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpeSilHK\Rbuild12042f7a468c\affy\vignettes': 'EWSnap.png' (49863 bytes), 'affy-011.pdf' (406214 bytes), 'affy-016.pdf' (10506 bytes), 'affy-018.pdf' (4753 bytes), 'affy-021.pdf' (4713 bytes), 'affy-027.pdf' (7619 bytes), 'affy.R' (8594 bytes), 'affy.Rnw' (35600 bytes), 'affy.bib' (11283 bytes), 'affy.tex' (45577 bytes), 'builtinMethods.Rnw' (10608 bytes), 'builtinMethods.tex' (11568 bytes), 'customMethods.Rnw' (6002 bytes), 'image.png' (60237 bytes), 'vim.Rnw' (3478 bytes), 'widget1.ps' (1.35256e+06 bytes), 'widget2.ps' (1.29668e+06 bytes), 'widgetfilechooser.png' (13403 bytes)
--- failed re-building 'builtinMethods.Rnw'

--- re-building 'customMethods.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "customMethods.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'customMethods.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'customMethods.pdf' for vignette with name 'customMethods' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpeSilHK\Rbuild12042f7a468c\affy\vignettes': 'EWSnap.png' (49863 bytes), 'affy-011.pdf' (406214 bytes), 'affy-016.pdf' (10506 bytes), 'affy-018.pdf' (4753 bytes), 'affy-021.pdf' (4713 bytes), 'affy-027.pdf' (7619 bytes), 'affy.R' (8594 bytes), 'affy.Rnw' (35600 bytes), 'affy.bib' (11283 bytes), 'affy.tex' (45577 bytes), 'builtinMethods.R' (986 bytes), 'builtinMethods.Rnw' (10608 bytes), 'builtinMethods.tex' (11568 bytes), 'customMethods.Rnw' (6002 bytes), 'customMethods.tex' (7318 bytes), 'image.png' (60237 bytes), 'vim.Rnw' (3478 bytes), 'widget1.ps' (1.35256e+06 bytes), 'widget2.ps' (1.29668e+06 bytes), 'widgetfilechooser.png' (13403 bytes)
--- failed re-building 'customMethods.Rnw'

--- re-building 'vim.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "vim.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'vim.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'vim.pdf' for vignette with name 'vim' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpeSilHK\Rbuild12042f7a468c\affy\vignettes': 'EWSnap.png' (49863 bytes), 'affy-011.pdf' (406214 bytes), 'affy-016.pdf' (10506 bytes), 'affy-018.pdf' (4753 bytes), 'affy-021.pdf' (4713 bytes), 'affy-027.pdf' (7619 bytes), 'affy.R' (8594 bytes), 'affy.Rnw' (35600 bytes), 'affy.bib' (11283 bytes), 'affy.tex' (45577 bytes), 'builtinMethods.R' (986 bytes), 'builtinMethods.Rnw' (10608 bytes), 'builtinMethods.tex' (11568 bytes), 'customMethods.R' (2430 bytes), 'customMethods.Rnw' (6002 bytes), 'customMethods.tex' (7318 bytes), 'image.png' (60237 bytes), 'vim.Rnw' (3478 bytes), 'vim.tex' (3617 bytes), 'widget1.ps' (1.35256e+06 bytes), 'widget2.ps' (1.29668e+06 bytes), 'widgetfilechooser.png' (13403 bytes)
--- failed re-building 'vim.Rnw'

SUMMARY: processing the following files failed:
  'affy.Rnw' 'builtinMethods.Rnw' 'customMethods.Rnw' 'vim.Rnw'

Error: Vignette re-building failed.
Execution halted