Back to "Blame Jeroen" build/check report for BioC 3.11 |
This page was generated on 2020-04-15 03:20:12 -0400 (Wed, 15 Apr 2020).
These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html) |
TO THE DEVELOPERS/MAINTAINERS OF THE Rsubread PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 74/89 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
Rsubread 2.1.2 Wei Shi
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped |
Package: Rsubread |
Version: 2.1.2 |
Command: chmod a+r Rsubread -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Rsubread |
StartedAt: 2020-04-14 19:22:48 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 19:26:37 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 228.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r Rsubread -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Rsubread ### ############################################################################## ############################################################################## * checking for file 'Rsubread/DESCRIPTION' ... OK * preparing 'Rsubread': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Rsubread.Rnw' using Sweave Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "Rsubread.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'Rsubread.Rnw' failed with diagnostics: Failed to locate 'texi2pdf' output file 'Rsubread.pdf' for vignette with name 'Rsubread' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpAjfgVU\Rbuild95c62d34a8f\Rsubread\vignettes': 'Rsubread.Rnw' (9727 bytes), 'Rsubread.tex' (36459 bytes), 'alignResults.BAM' (88192 bytes), 'alignResults.BAM.indel.vcf' (307 bytes), 'alignResults.BAM.summary' (115 bytes), 'alignResultsPE.BAM' (148020 bytes), 'alignResultsPE.BAM.indel.vcf' (307 bytes), 'alignResultsPE.BAM.summary' (306 bytes), 'reference_index.00.b.array' (23114 bytes), 'reference_index.00.b.tab' (2.31225e+08 bytes), 'reference_index.files' (49 bytes), 'reference_index.log' (0 bytes), 'reference_index.reads' (16 bytes) --- failed re-building 'Rsubread.Rnw' SUMMARY: processing the following file failed: 'Rsubread.Rnw' Error: Vignette re-building failed. Execution halted