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BUILD report for Rsubread on tokay2

This page was generated on 2020-04-15 03:20:12 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE Rsubread PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 74/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rsubread 2.1.2
Wei Shi , Yang Liao and Gordon K Smyth
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/Rsubread
Branch: master
Last Commit: aa7d0ba
Last Changed Date: 2020-02-17 22:35:15 -0400 (Mon, 17 Feb 2020)
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 

Summary

Package: Rsubread
Version: 2.1.2
Command: chmod a+r Rsubread -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Rsubread
StartedAt: 2020-04-14 19:22:48 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:26:37 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 228.7 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r Rsubread -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Rsubread
###
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* checking for file 'Rsubread/DESCRIPTION' ... OK
* preparing 'Rsubread':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Rsubread.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "Rsubread.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'Rsubread.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'Rsubread.pdf' for vignette with name 'Rsubread' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\RtmpAjfgVU\Rbuild95c62d34a8f\Rsubread\vignettes': 'Rsubread.Rnw' (9727 bytes), 'Rsubread.tex' (36459 bytes), 'alignResults.BAM' (88192 bytes), 'alignResults.BAM.indel.vcf' (307 bytes), 'alignResults.BAM.summary' (115 bytes), 'alignResultsPE.BAM' (148020 bytes), 'alignResultsPE.BAM.indel.vcf' (307 bytes), 'alignResultsPE.BAM.summary' (306 bytes), 'reference_index.00.b.array' (23114 bytes), 'reference_index.00.b.tab' (2.31225e+08 bytes), 'reference_index.files' (49 bytes), 'reference_index.log' (0 bytes), 'reference_index.reads' (16 bytes)
--- failed re-building 'Rsubread.Rnw'

SUMMARY: processing the following file failed:
  'Rsubread.Rnw'

Error: Vignette re-building failed.
Execution halted