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BUILD report for DESeq on tokay2

This page was generated on 2020-04-15 03:20:12 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE DESeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 28/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq 1.39.3
Simon Anders
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/DESeq
Branch: master
Last Commit: 01e71c7
Last Changed Date: 2020-03-31 15:16:12 -0400 (Tue, 31 Mar 2020)
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 

Summary

Package: DESeq
Version: 1.39.3
Command: chmod a+r DESeq -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DESeq
StartedAt: 2020-04-14 19:25:44 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:26:13 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 29.2 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r DESeq -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DESeq
###
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* checking for file 'DESeq/DESCRIPTION' ... OK
* preparing 'DESeq':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DESeq.Rnw' using Sweave

Error: processing vignette 'DESeq.Rnw' failed with diagnostics:
 chunk 8 (label = conditionCheck) 
Error : identical(condition, factor(c("untreated", "untreated", "treated",  .... is not TRUE

--- failed re-building 'DESeq.Rnw'

SUMMARY: processing the following file failed:
  'DESeq.Rnw'

Error: Vignette re-building failed.
Execution halted