Guangchuang Yu
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/treeio |
| Branch: RELEASE_3_11 |
| Last Commit: dbe4429 |
| Last Changed Date: 2020-04-27 15:04:25 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:57 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE treeio PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1829/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| treeio 1.12.0 Guangchuang Yu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: treeio |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/treeio_1.12.0.tar.gz && rm -rf treeio.buildbin-libdir && mkdir treeio.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treeio.buildbin-libdir treeio_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL treeio_1.12.0.zip && rm treeio_1.12.0.tar.gz treeio_1.12.0.zip |
| StartedAt: 2020-10-16 17:11:46 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:13:11 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 85.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/treeio_1.12.0.tar.gz && rm -rf treeio.buildbin-libdir && mkdir treeio.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treeio.buildbin-libdir treeio_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL treeio_1.12.0.zip && rm treeio_1.12.0.tar.gz treeio_1.12.0.zip
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install for i386
* installing *source* package 'treeio' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'treeio'
finding HTML links ... done
Nnode.treedata html
as.treedata html
beast-parser html
drop.tip-methods html
get-placements html
get.tree html
get.treetext-methods html
getNodeNum html
is.ggtree html
isTip html
jplace-class html
label_branch_paml html
mask html
merge_tree html
print.treedataList html
raxml2nwk html
read-jtree html
read.astral html
read.codeml html
read.codeml_mlc html
read.fasta html
read.hyphy html
read.hyphy.seq html
read.iqtree html
read.jplace html
read.mega_tabular html
read.newick html
read.nhx html
read.paml_rst html
read.phylip html
read.phylip.seq html
read.phylip.tree html
read.phyloxml html
read.r8s html
read.raxml html
reexports html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpOMczJY/R.INSTALL140c6abc2cb/treeio/man/reexports.Rd:39: file link 'is.rooted' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpOMczJY/R.INSTALL140c6abc2cb/treeio/man/reexports.Rd:39: file link 'Nnode' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpOMczJY/R.INSTALL140c6abc2cb/treeio/man/reexports.Rd:39: file link 'Ntip' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpOMczJY/R.INSTALL140c6abc2cb/treeio/man/reexports.Rd:41: file link 'full_join' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpOMczJY/R.INSTALL140c6abc2cb/treeio/man/reexports.Rd:43: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpOMczJY/R.INSTALL140c6abc2cb/treeio/man/reexports.Rd:47: file link 'get.data' in package 'tidytree' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpOMczJY/R.INSTALL140c6abc2cb/treeio/man/reexports.Rd:47: file link 'get.fields' in package 'tidytree' does not exist and so has been treated as a topic
rename_taxa html
rescale_tree html
root-method html
tree_subset html
write-jtree html
write.beast html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'treeio' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'treeio' as treeio_1.12.0.zip
* DONE (treeio)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'treeio' successfully unpacked and MD5 sums checked