Armen R. Karapetyan
| Snapshot Date: 2020-10-15 14:40:03 -0400 (Thu, 15 Oct 2020) |
| URL: https://git.bioconductor.org/packages/transcriptR |
| Branch: RELEASE_3_11 |
| Last Commit: 21b4ed0 |
| Last Changed Date: 2020-04-27 14:53:17 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-16 11:59:05 -0400 (Fri, 16 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE transcriptR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1823/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| transcriptR 1.16.0 Armen R. Karapetyan
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: transcriptR |
| Version: 1.16.0 |
| Command: rm -rf transcriptR.buildbin-libdir && mkdir transcriptR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transcriptR.buildbin-libdir transcriptR_1.16.0.tar.gz |
| StartedAt: 2020-10-16 11:30:34 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 11:32:14 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 100.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: transcriptR_1.16.0.zip |
| PackageFileSize: 3.195 MiB |
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### Running command:
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### rm -rf transcriptR.buildbin-libdir && mkdir transcriptR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transcriptR.buildbin-libdir transcriptR_1.16.0.tar.gz
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install for i386
* installing *source* package 'transcriptR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'transcriptR'
finding HTML links ... done
ChipDataSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/ChipDataSet-class.Rd:15: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/ChipDataSet-class.Rd:17: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
TranscriptionDataSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/TranscriptionDataSet-class.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/TranscriptionDataSet-class.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/TranscriptionDataSet-class.Rd:26: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/TranscriptionDataSet-class.Rd:29: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/TranscriptionDataSet-class.Rd:43: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
addFeature-methods html
annot html
finding level-2 HTML links ... done
annotateTranscripts-methods html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/annotateTranscripts-methods.Rd:17: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/annotateTranscripts-methods.Rd:24: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
breakTranscriptsByPeaks-methods html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/breakTranscriptsByPeaks-methods.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
cds html
constructCDS html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/constructCDS.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/constructCDS.Rd:22: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/constructCDS.Rd:44: file link 'ScanBamParam' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/constructCDS.Rd:65: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
constructTDS html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/constructTDS.Rd:13: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/constructTDS.Rd:29: file link 'ScanBamParam' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/constructTDS.Rd:49: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
detectTranscripts-methods html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/detectTranscripts-methods.Rd:42: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/detectTranscripts-methods.Rd:47: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
estimateBackground-methods html
estimateGapDistance-methods html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/estimateGapDistance-methods.Rd:20: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
exportCoverage-methods html
getConfusionMatrix-methods html
getGenomicAnnot-methods html
getPeaks-methods html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/getPeaks-methods.Rd:17: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
getPredictorSignificance-methods html
getProbTreshold-methods html
getQuadProb-methods html
getTestedGapDistances-methods html
getTranscripts-methods html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp6Hon37/R.INSTALL2fd850cb2a7e/transcriptR/man/getTranscripts-methods.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
peaksToBed-methods html
plotErrorRate-methods html
plotFeatures-methods html
plotGenomicAnnot-methods html
plotROC-methods html
predictStrand-methods html
predictTssOverlap-methods html
show html
tds html
transcriptsToBed-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'transcriptR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'transcriptR' as transcriptR_1.16.0.zip
* DONE (transcriptR)