| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:47 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE selectKSigs PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1619/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| selectKSigs 1.0.0 Zhi Yang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: selectKSigs |
| Version: 1.0.0 |
| Command: rm -rf selectKSigs.buildbin-libdir && mkdir selectKSigs.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=selectKSigs.buildbin-libdir selectKSigs_1.0.0.tar.gz |
| StartedAt: 2020-10-17 11:37:57 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 11:38:58 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 60.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: selectKSigs_1.0.0.zip |
| PackageFileSize: 1.047 MiB |
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### Running command:
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### rm -rf selectKSigs.buildbin-libdir && mkdir selectKSigs.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=selectKSigs.buildbin-libdir selectKSigs_1.0.0.tar.gz
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install for i386
* installing *source* package 'selectKSigs' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c EMalgorithm.cpp -o EMalgorithm.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convertFromToVector.cpp -o convertFromToVector.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o selectKSigs.dll tmp.def EMalgorithm.o RcppExports.o convertFromToVector.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/selectKSigs.buildbin-libdir/00LOCK-selectKSigs/00new/selectKSigs/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'selectKSigs'
finding HTML links ... done
Calculate_Likelihood_test html
calcPMSLikelihood html
convertFromTurbo_F html
convertFromTurbo_Q html
convertToTurbo_F html
convertToTurbo_Q html
cv_PMSignature html
getBG html
getCounts html
getExposures html
getFeatureVec html
getFeatures html
getK html
getLL html
getLogLikelihoodC html
getSamplelist html
getSamplelistG html
getSignatures html
getTranscription html
select_kth_fold html
splitG html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'selectKSigs' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c EMalgorithm.cpp -o EMalgorithm.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convertFromToVector.cpp -o convertFromToVector.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o selectKSigs.dll tmp.def EMalgorithm.o RcppExports.o convertFromToVector.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/selectKSigs.buildbin-libdir/selectKSigs/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'selectKSigs' as selectKSigs_1.0.0.zip
* DONE (selectKSigs)