Thomas J. Hardcastle
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/segmentSeq |
| Branch: RELEASE_3_11 |
| Last Commit: 4bb4854 |
| Last Changed Date: 2020-04-27 14:21:25 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:47 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE segmentSeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1618/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| segmentSeq 2.22.0 Thomas J. Hardcastle
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: segmentSeq |
| Version: 2.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/segmentSeq_2.22.0.tar.gz && rm -rf segmentSeq.buildbin-libdir && mkdir segmentSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=segmentSeq.buildbin-libdir segmentSeq_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL segmentSeq_2.22.0.zip && rm segmentSeq_2.22.0.tar.gz segmentSeq_2.22.0.zip |
| StartedAt: 2020-10-16 18:28:33 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:30:54 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 140.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/segmentSeq_2.22.0.tar.gz && rm -rf segmentSeq.buildbin-libdir && mkdir segmentSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=segmentSeq.buildbin-libdir segmentSeq_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL segmentSeq_2.22.0.zip && rm segmentSeq_2.22.0.tar.gz segmentSeq_2.22.0.zip
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install for i386
* installing *source* package 'segmentSeq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'segmentSeq'
finding HTML links ... done
SL html
alignmentClass-class html
alignmentData-class html
alignmentMeth-class html
averageMethylationRegions html
finding level-2 HTML links ... done
classifySeg html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8QKcj8/R.INSTALL237854a42ae6/segmentSeq/man/classifySeg.Rd:45: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
findChunks html
getCounts html
getOverlaps html
givenExpression html
hSL html
heuristicSeg html
lociData-class html
lociLikelihoods html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8QKcj8/R.INSTALL237854a42ae6/segmentSeq/man/lociLikelihoods.Rd:27: file link 'getLikelihoods.NB' in package 'baySeq' does not exist and so has been treated as a topic
mergeMethSegs html
methData-class html
normaliseNC html
plotGenome html
plotMeth html
plotMethDistribution html
processAD html
readMethods html
readMeths html
segClass-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8QKcj8/R.INSTALL237854a42ae6/segmentSeq/man/segClass-class.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
segData-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8QKcj8/R.INSTALL237854a42ae6/segmentSeq/man/segData-class.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
segMeth-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp8QKcj8/R.INSTALL237854a42ae6/segmentSeq/man/segMeth-class.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
segmentSeq-package html
selectLoci html
summariseLoci html
thresholdFinder html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'segmentSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'segmentSeq' as segmentSeq_2.22.0.zip
* DONE (segmentSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'segmentSeq' successfully unpacked and MD5 sums checked