Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-04-29 15:30:27 -0400 (Wed, 29 Apr 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE rsbml PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1539/1904 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rsbml 2.46.0 Michael Lawrence
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | [ ERROR ] | ERROR | skipped | skipped |
Package: rsbml |
Version: 2.46.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL rsbml |
StartedAt: 2020-04-28 19:24:06 -0400 (Tue, 28 Apr 2020) |
EndedAt: 2020-04-28 19:24:38 -0400 (Tue, 28 Apr 2020) |
EllapsedTime: 31.8 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL rsbml ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘rsbml’ ... ** using staged installation checking for pkg-config... /usr/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for LIBSBML... yes configure: === Begin local SOSLib build === checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking build system type... i386-apple-darwin18.7.0 checking host system type... i386-apple-darwin18.7.0 checking for g++... g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking whether gcc accepts -fpic... yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether make sets $(MAKE)... (cached) yes checking for autoconf... /usr/local/bin/autoconf checking for aclocal... /usr/local/bin/aclocal checking for make... /usr/bin/make checking for ar... /usr/bin/ar checking for swig... /usr/local/bin/swig checking for perl... /usr/bin/perl checking for pkg-config... /usr/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for SBML... yes checking for correct functioning of SBML... no: CFLAGS=-g -O2 -pg -Wno-unknown-pragmas -Wall -ansi -std=iso9899:1990 -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include LDFLAGS= LIBS=-lm -lstdc++ -L/usr/local/lib -lsbml configure: error: Can not link to SBML Library: Please, make sure to use libSBML version >= 3.0.2 or CVS configure: === End local SOSLib build === configure: creating ./config.status config.status: creating src/Makevars ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c StringMap.c -o StringMap.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c check.c -o check.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c doc.c -o doc.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c dom.c -o dom.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c graph.c -o graph.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c io.c -o io.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c layoutWrappers.cpp -o layoutWrappers.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c mathml.c -o mathml.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/Cellar/libxml2/2.9.10_1/include/libxml2 -I/usr/local/include -I/usr/local/include -fPIC -Wall -g -O2 -c simulate.c -o simulate.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rsbml.so StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -L/usr/local/lib -lsbml -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: object file (/usr/local/lib/libsbml.a(CVTerm.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(CompartmentType.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Compartment.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Constraint.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Date.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Delay.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(EventAssignment.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Event.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(FunctionDefinition.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(InitialAssignment.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(KineticLaw.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(List.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ModelCreator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ModelHistory.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Model.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Parameter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Reaction.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Rule.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLDocument.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLReader.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLWriter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBase.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SpeciesReference.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SpeciesType.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Species.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(StoichiometryMath.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Trigger.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UnitDefinition.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UnitKind.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Unit.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLAttributes.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLError.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLNode.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(util.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLTypeCodes.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(CompressCommon.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLErrorLog.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(MetaIdFilter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLErrorLog.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(AlgebraicRule.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SyntaxChecker.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLNamespaces.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(AssignmentRule.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LocalParameter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLNamespaces.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLInputStream.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLOutputStream.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(CallbackRegistry.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(FormulaUnitsData.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(OutputCompressor.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(RDFAnnotationParser.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBaseExtensionPoint.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ConversionProperties.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UnitFormulaFormatter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLConverterRegistry.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLExtensionRegistry.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLInternalValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SimpleSpeciesReference.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ModifierSpeciesReference.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLConstructorException.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UnitConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(StrictUnitConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBO.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(IdList.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ListOf.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(IdFilter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Priority.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(RateRule.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLToken.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLError.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(Validator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLTriple.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBasePlugin.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLExtension.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLExtensionException.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ISBMLExtensionNamespaces.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(memory.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(bzfstream.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(zfstream.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLVisitor.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(VConstraint.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(zipfstream.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLTokenizer.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ElementFilter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLTransforms.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(PowerUnitsCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLIdConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ConversionOption.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLRuleConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ExponentUnitsCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLUnitsConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ArgumentsUnitsCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLRateOfConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(KineticLawUnitsCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLReactionConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(OverdeterminedValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLInferUnitsConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBOConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(L1CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ModelingPracticeValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLLevelVersionConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLStripPackageConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(L2v1CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(L2v2CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(L2v3CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(L2v4CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(L3v1CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(L3v2CompatibilityValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(MathMLConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ArgumentsUnitsCheckWarnings.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLLevel1Version1Converter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLLocalParameterConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(InternalConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(IdentifierConsistencyValidator.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLInitialAssignmentConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLFunctionDefinitionConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLParser.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ASTBasePlugin.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBasePluginCreatorBase.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(libsbml-version.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(MathFilter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLHandler.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLParser.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(RateOfCycles.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueMetaId.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLConverter.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(KineticLawVars.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LambdaMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(AssignmentCycles.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(IdNameNewOnSBase.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueIdsInModel.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ReportEmptyListOf.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueVarsInRules.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ValidCnUnitsValue.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(CiElementMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(CiElementNot0DComp.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ModelUnitsDangling.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(NumberArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(OverDeterminedCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LogicalArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(NumericArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(EqualityArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(PieceBooleanMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SpeciesReactionOrRule.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(StoichiometryMathVars.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueIdsInKineticLaw.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(AssignmentRuleOrdering.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(FunctionApplyMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(FunctionDefinitionVars.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(NumericReturnMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(FunctionNoArgsMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LocalParameterMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(PiecewiseValueMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(RateOfCiTargetMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(CompartmentOutsideCycles.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(FunctionReferredToExists.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(RateOfAssignmentMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(RateOfCompartmentMathCheck.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueVarsInEventsAndRules.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(DuplicateTopLevelAnnotation.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(FunctionDefinitionRecursion.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueIdsForUnitDefinitions.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueVarsInEventAssignments.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LocalParameterShadowsIdInModel.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueSpeciesTypesInCompartment.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueSymbolsInInitialAssignments.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueVarsInInitialAssignmentsAndRules.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(SBMLConvert.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UnitsBase.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(unzip.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(zip.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(MathMLBase.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(UniqueIdBase.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLHandler.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLFileBuffer.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLMemoryBuffer.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(IdBase.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(ioapi.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLTranscode.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLAttributes.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(LibXMLNamespaces.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(InputDecompressor.o)) was built for newer OSX version (10.14) than being linked (10.13) ld: warning: object file (/usr/local/lib/libsbml.a(XMLBuffer.o)) was built for newer OSX version (10.14) than being linked (10.13) installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘type’ in package ‘rsbml’ Creating a new generic function for ‘type<-’ in package ‘rsbml’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘rsbml’: .onLoad failed in loadNamespace() for 'rsbml', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so': dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so, 6): Symbol not found: _ASTNode_isAvogadro Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so Expected in: flat namespace in /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so Error: loading failed Execution halted ERROR: loading failed * removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rsbml’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/rsbml’