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INSTALL report for qusage on tokay2

This page was generated on 2020-10-17 11:57:32 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE qusage PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1404/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qusage 2.22.0
Christopher Bolen
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/qusage
Branch: RELEASE_3_11
Last Commit: ba66160
Last Changed Date: 2020-04-27 14:36:06 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: qusage
Version: 2.22.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/qusage_2.22.0.tar.gz && rm -rf qusage.buildbin-libdir && mkdir qusage.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qusage.buildbin-libdir qusage_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL qusage_2.22.0.zip && rm qusage_2.22.0.tar.gz qusage_2.22.0.zip
StartedAt: 2020-10-16 17:08:26 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:09:20 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 53.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/qusage_2.22.0.tar.gz && rm -rf qusage.buildbin-libdir && mkdir qusage.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qusage.buildbin-libdir qusage_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL qusage_2.22.0.zip && rm qusage_2.22.0.tar.gz qusage_2.22.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 8776k  100 8776k    0     0  55.9M      0 --:--:-- --:--:-- --:--:-- 58.7M

install for i386

* installing *source* package 'qusage' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'qusage'
    finding HTML links ... done
    GeneSets                                html  
    QSarray-class                           html  
    aggregateGeneSet                        html  
    calcBayesCI                             html  
    calcVIF                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpiM58Ri/R.INSTALL15f01b9547dc/qusage/man/calcVIF.Rd:12: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    combinePDFs                             html  
    eset.full                               html  
    fluVaccine                              html  
    getXcoords                              html  
    makeComparison                          html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpiM58Ri/R.INSTALL15f01b9547dc/qusage/man/makeComparison.Rd:13: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    newQSarray                              html  
    pVal                                    html  
    plotCIs                                 html  
    plotCIsGenes                            html  
    plotCombinedPDF                         html  
    plotDensityCurves                       html  
    plotGeneSetDistributions                html  
    qgen                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpiM58Ri/R.INSTALL15f01b9547dc/qusage/man/qgen.Rd:21: file link 'corStruct' in package 'nlme' does not exist and so has been treated as a topic
    qsTable                                 html  
    qusage                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpiM58Ri/R.INSTALL15f01b9547dc/qusage/man/qusage.Rd:12: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    read.gmt                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'qusage' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qusage' as qusage_2.22.0.zip
* DONE (qusage)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'qusage' successfully unpacked and MD5 sums checked