Package: qckitfastq

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qckitfastq

StartedAt: 2020-01-16 00:35:49 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 00:36:16 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 27.7 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qckitfastq
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* checking for file ‘qckitfastq/DESCRIPTION’ ... OK
* preparing ‘qckitfastq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘qckitfastq’ ...
** using staged installation
** libs
clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c calc_adapter_content.cpp -o calc_adapter_content.o
In file included from calc_adapter_content.cpp:7:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/find.h:44:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/modifier.h:48:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel.h:94:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:66:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
    std::shared_timed_mutex  _mutex{};        // TODO(rrahn): Replace by shared_mutex when c++17 is available.
         ^
/usr/local/clang8/bin/../include/c++/v1/shared_mutex:206:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
                                                         ^
In file included from calc_adapter_content.cpp:7:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/find.h:44:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/modifier.h:48:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel.h:94:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:127:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
    std::shared_timed_mutex  _mutex{};        // TODO(rrahn): Replace by shared_mutex when c++17 is available.
         ^
/usr/local/clang8/bin/../include/c++/v1/shared_mutex:206:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
                                                         ^
2 errors generated.
make: *** [calc_adapter_content.o] Error 1
ERROR: compilation failed for package ‘qckitfastq’
* removing ‘/private/tmp/RtmpcvqT0b/Rinst3d004d5e117c/qckitfastq’
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ERROR: package installation failed