Shraddha Pai
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/netDx |
| Branch: RELEASE_3_11 |
| Last Commit: e08c71c |
| Last Changed Date: 2020-10-12 17:37:46 -0400 (Mon, 12 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:16 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE netDx PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1186/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| netDx 1.0.4 Shraddha Pai
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | TIMEOUT | skipped | skipped | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
| Package: netDx |
| Version: 1.0.4 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch netDx |
| StartedAt: 2020-10-16 18:56:52 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:59:58 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 186.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch netDx
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* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
* installing *source* package 'netDx' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'netDx'
finding HTML links ... done
MB.pheno html
RR_featureTally html
avgNormDiff html
buildPredictor html
buildPredictor_sparseGenetic html
callFeatSel html
cleanPathwayName html
cnv_GR html
cnv_TTstatus html
cnv_netPass html
cnv_netScores html
cnv_patientNetCount html
cnv_pheno html
compareShortestPath html
compileFeatureScores html
compileFeatures html
confmat html
convertProfileToNetworks html
countIntType html
countIntType_batch html
countPatientsInNet html
createPSN_MultiData html
dataList2List html
dot-get_cache html
enrichLabelNets html
featScores html
fetchPathwayDefinitions html
genes html
getCorrType html
getEMapInput html
getEMapInput_many html
getEnr html
getFeatureScores html
getFileSep html
getGMjar_path html
getNetConsensus html
getOR html
getPatientPredictions html
getPatientRankings html
getRegionOL html
getSimilarity html
makePSN_NamedMatrix html
makePSN_RangeSets html
makeQueries html
makeSymmetric html
mapNamedRangesToSets html
matrix_getIJ html
moveInteractionNets html
normDiff html
npheno html
pathwayList html
pathway_GR html
perfCalc html
pheno html
pheno_full html
plotEmap html
plotIntegratedPatientNetwork html
plotPerf html
plotPerf_multi html
plot_tSNE html
predRes html
predictPatientLabels html
pruneNet html
pruneNet_pctX html
pruneNets html
randAlphanumString html
readPathways html
runFeatureSelection html
runQuery html
setupFeatureDB html
silh html
sim.eucscale html
sim.pearscale html
simpleCap html
smoothMutations_LabelProp html
sparsify2 html
sparsify3 html
splitTestTrain html
splitTestTrain_resampling html
thresholdSmoothedMutations html
updateNets html
writeNetsSIF html
writeQueryBatchFile html
writeQueryFile html
writeWeightedNets html
xpr html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (netDx)
Making 'packages.html' ... done