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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL metaArray
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘metaArray’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2  -Wall -c contr.c -o contr.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2  -Wall -c dproc.c -o dproc.o
dproc.c: In function ‘malloc_CH’:
dproc.c:111:21: warning: variable ‘num’ set but not used [-Wunused-but-set-variable]
   int i, j, nr, nc, num;
                     ^~~
dproc.c: In function ‘free_CH’:
dproc.c:192:16: warning: unused variable ‘nc’ [-Wunused-variable]
   int num, nr, nc;
                ^~
dproc.c:192:12: warning: variable ‘nr’ set but not used [-Wunused-but-set-variable]
   int num, nr, nc;
            ^~
dproc.c:192:7: warning: variable ‘num’ set but not used [-Wunused-but-set-variable]
   int num, nr, nc;
       ^~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2  -Wall -c dproc2.c -o dproc2.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2  -Wall -c intcor.c -o intcor.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2  -Wall -c lowess.c -o lowess.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2  -Wall -c mmath.c -o mmath.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2  -Wall -c perm.c -o perm.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -DUSEDOUBLE -fpic  -g -O2  -Wall -c poe.c -o poe.o
poe.c: In function ‘poe_one_iter’:
poe.c:131:53: warning: variable ‘shift’ set but not used [-Wunused-but-set-variable]
   double kappa_b, kappa_a, kappa_new, aaa, res_max, shift;
                                                     ^~~~~
poe.c:120:20: warning: variable ‘accept’ set but not used [-Wunused-but-set-variable]
   int nr,nc,tt,gg, accept;
                    ^~~~~~
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-metaArray/00new/metaArray/libs
** R
** data
** byte-compile and prepare package for lazy loading
Warning: Package 'MergeMaid' is deprecated and will be removed from Bioconductor
  version 3.12
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metaArray)