| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:58:44 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE imageHTS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 865/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| imageHTS 1.38.0 Joseph Barry
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
| Package: imageHTS |
| Version: 1.38.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:imageHTS.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings imageHTS_1.38.0.tar.gz |
| StartedAt: 2020-10-17 02:10:03 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 02:14:36 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 272.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: imageHTS.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:imageHTS.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings imageHTS_1.38.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/imageHTS.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* this is package ‘imageHTS’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘imageHTS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
extractFeatures 15.553 0.791 16.356
countObjects 7.959 0.378 8.347
segmentWells 5.991 0.226 6.227
fileHTS 3.252 0.029 5.073
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.11-bioc/meat/imageHTS.Rcheck/00check.log’
for details.
imageHTS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL imageHTS ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘imageHTS’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (imageHTS)
imageHTS.Rcheck/imageHTS-Ex.timings
| name | user | system | elapsed | |
| collectCellFeatures | 0.000 | 0.001 | 0.001 | |
| countObjects | 7.959 | 0.378 | 8.347 | |
| extractFeatures | 15.553 | 0.791 | 16.356 | |
| fileHTS | 3.252 | 0.029 | 5.073 | |
| getImageConf | 1.598 | 0.003 | 1.602 | |
| getUnames | 3.729 | 0.006 | 3.738 | |
| getWellFeatures | 4.862 | 0.009 | 4.873 | |
| highlightSegmentation | 0 | 0 | 0 | |
| installCellPicker | 2.232 | 0.014 | 2.250 | |
| makeCellHTS | 0.000 | 0.000 | 0.001 | |
| parseDCF | 0.002 | 0.001 | 0.002 | |
| parseImageConf | 1.570 | 0.004 | 1.575 | |
| popCellPicker | 1.522 | 0.004 | 1.527 | |
| prw2uname | 0.003 | 0.000 | 0.004 | |
| readLearnTS | 0 | 0 | 0 | |
| segmentATH | 0 | 0 | 0 | |
| segmentWells | 5.991 | 0.226 | 6.227 | |
| segmentYeastBF | 2.831 | 0.562 | 3.396 | |
| summarizeWells | 0.000 | 0.001 | 0.001 | |
| zprime | 3.851 | 0.016 | 3.871 | |