Package: genoset

Version: 1.43.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL genoset

StartedAt: 2020-01-15 18:57:49 -0500 (Wed, 15 Jan 2020)

EndedAt: 2020-01-15 18:58:32 -0500 (Wed, 15 Jan 2020)

EllapsedTime: 43.3 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL genoset
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘genoset’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c bounds.c -o bounds.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rangeSummaries.c -o rangeSummaries.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c utils.c -o utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o genoset.so bounds.o init.o rangeSummaries.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-genoset/00new/genoset/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
From .checkSubclasses(): subclass "GenomicPos" of class "GenomicRanges" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x7fc494028e78>, where2=<environment: namespace:genoset>]
From .checkSubclasses(): subclass "UnstitchedGPos" of class "GenomicRanges" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x7fc494028e78>, where2=<environment: namespace:genoset>]
From .checkSubclasses(): subclass "StitchedGPos" of class "GenomicRanges" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x7fc494028e78>, where2=<environment: namespace:genoset>]
From .checkSubclasses(): subclass "UnstitchedGPos" of class "GenomicRanges" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x7fc494028e78>, where2=<environment: namespace:genoset>]
From .checkSubclasses(): subclass "StitchedGPos" of class "GenomicRanges" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x7fc494028e78>, where2=<environment: namespace:genoset>]
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genoset)