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INSTALL report for compcodeR on tokay2

This page was generated on 2020-10-17 11:56:22 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE compcodeR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 356/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
compcodeR 1.24.0
Charlotte Soneson
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/compcodeR
Branch: RELEASE_3_11
Last Commit: 342ff43
Last Changed Date: 2020-04-27 14:40:07 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: compcodeR
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/compcodeR_1.24.0.tar.gz && rm -rf compcodeR.buildbin-libdir && mkdir compcodeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compcodeR.buildbin-libdir compcodeR_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL compcodeR_1.24.0.zip && rm compcodeR_1.24.0.tar.gz compcodeR_1.24.0.zip
StartedAt: 2020-10-16 17:21:36 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:23:35 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 119.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/compcodeR_1.24.0.tar.gz && rm -rf compcodeR.buildbin-libdir && mkdir compcodeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compcodeR.buildbin-libdir compcodeR_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL compcodeR_1.24.0.zip && rm compcodeR_1.24.0.tar.gz compcodeR_1.24.0.zip
###
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100 2346k  100 2346k    0     0  20.3M      0 --:--:-- --:--:-- --:--:-- 21.6M

install for i386

* installing *source* package 'compcodeR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'gdata::reorder.factor' by 'gplots::reorder.factor' when loading 'compcodeR'
** help
*** installing help indices
  converting help for package 'compcodeR'
    finding HTML links ... done
    DESeq.GLM.createRmd                     html  
    DESeq.nbinom.createRmd                  html  
    DESeq2.createRmd                        html  
    DSS.createRmd                           html  
    EBSeq.createRmd                         html  
    NBPSeq.createRmd                        html  
    NOISeq.prenorm.createRmd                html  
    TCC.createRmd                           html  
    baySeq.createRmd                        html  
    checkDataObject                         html  
    checkTableConsistency                   html  
    check_compData                          html  
    check_compData_results                  html  
    compData-class                          html  
    compData                                html  
    compcodeR-package                       html  
    convertListTocompData                   html  
    convertcompDataToList                   html  
    edgeR.GLM.createRmd                     html  
    edgeR.exact.createRmd                   html  
    generateCodeHTMLs                       html  
    generateSyntheticData                   html  
    listcreateRmd                           html  
    logcpm.limma.createRmd                  html  
    runComparison                           html  
    runComparisonGUI                        html  
    runDiffExp                              html  
    show-compData-method                    html  
    sqrtcpm.limma.createRmd                 html  
    summarizeSyntheticDataSet               html  
    ttest.createRmd                         html  
    voom.limma.createRmd                    html  
    voom.ttest.createRmd                    html  
    vst.limma.createRmd                     html  
    vst.ttest.createRmd                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'gdata::reorder.factor' by 'gplots::reorder.factor' when loading 'compcodeR'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'gdata::reorder.factor' by 'gplots::reorder.factor' when loading 'compcodeR'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'compcodeR' ...
** testing if installed package can be loaded
Warning: replacing previous import 'gdata::reorder.factor' by 'gplots::reorder.factor' when loading 'compcodeR'
* MD5 sums
packaged installation of 'compcodeR' as compcodeR_1.24.0.zip
* DONE (compcodeR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'compcodeR' successfully unpacked and MD5 sums checked