Ted Natoli
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/cmapR |
| Branch: RELEASE_3_11 |
| Last Commit: c5f43d3 |
| Last Changed Date: 2020-04-27 15:34:53 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:19 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE cmapR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 325/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cmapR 1.0.0 Ted Natoli
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: cmapR |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cmapR_1.0.0.tar.gz && rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cmapR_1.0.0.zip && rm cmapR_1.0.0.tar.gz cmapR_1.0.0.zip |
| StartedAt: 2020-10-16 18:20:04 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:20:56 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 52.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cmapR_1.0.0.tar.gz && rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cmapR_1.0.0.zip && rm cmapR_1.0.0.tar.gz cmapR_1.0.0.zip
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install for i386
* installing *source* package 'cmapR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cmapR'
finding HTML links ... done
GCT-class html
GCT html
align_matrices html
annotate_gct html
append_dim html
cdesc_char html
check_colnames html
check_dups html
distil html
ds html
extract_gct html
fix_datatypes html
gene_set html
ids html
is.wholenumber html
kd_gct html
lxb2mat html
mat html
melt_gct html
finding level-2 HTML links ... done
merge_gct html
merge_with_precedence html
meta html
na_pad_matrix html
parse_gctx html
parse_gmt html
parse_gmx html
parse_grp html
process_ids html
rank_gct html
read_gctx_ids html
read_gctx_meta html
robust_zscore html
subset_gct html
subset_to_ids html
threshold html
transpose_gct html
update_gctx html
write_gct html
write_gctx html
write_gctx_meta html
write_gmt html
write_grp html
write_tbl html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cmapR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cmapR' as cmapR_1.0.0.zip
* DONE (cmapR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'cmapR' successfully unpacked and MD5 sums checked