Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQRSTU[V]WXYZ

INSTALL report for ViSEAGO on tokay2

This page was generated on 2020-10-17 11:57:59 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ViSEAGO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1876/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ViSEAGO 1.2.0
Aurelien Brionne
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/ViSEAGO
Branch: RELEASE_3_11
Last Commit: 22f848a
Last Changed Date: 2020-04-27 15:28:30 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  ERROR  OK 

Summary

Package: ViSEAGO
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ViSEAGO_1.2.0.tar.gz && rm -rf ViSEAGO.buildbin-libdir && mkdir ViSEAGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ViSEAGO.buildbin-libdir ViSEAGO_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ViSEAGO_1.2.0.zip && rm ViSEAGO_1.2.0.tar.gz ViSEAGO_1.2.0.zip
StartedAt: 2020-10-16 18:07:55 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:09:30 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 94.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ViSEAGO_1.2.0.tar.gz && rm -rf ViSEAGO.buildbin-libdir && mkdir ViSEAGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ViSEAGO.buildbin-libdir ViSEAGO_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ViSEAGO_1.2.0.zip && rm ViSEAGO_1.2.0.tar.gz ViSEAGO_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2225k  100 2225k    0     0  25.1M      0 --:--:-- --:--:-- --:--:-- 27.5M

install for i386

* installing *source* package 'ViSEAGO' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ViSEAGO'
    finding HTML links ... done
    Bioconductor2GO                         html  
    Custom2GO                               html  
    Ensembl2GO                              html  
    EntrezGene2GO                           html  
    EntrezGene_orthologs                    html  
    GO_SS-class                             html  
    GO_clusters-class                       html  
    GOclusters_heatmap-methods              html  
    GOcount-methods                         html  
    GOterms_heatmap-methods                 html  
    MDSplot-methods                         html  
    Uniprot2GO                              html  
    Upset-methods                           html  
    ViSEAGO                                 html  
    annotate-methods                        html  
    available_organisms-methods             html  
    build_GO_SS-methods                     html  
    clusters_cor-methods                    html  
    compare_clusters-methods                html  
    compute_SS_distances-methods            html  
    create_topGOdata-methods                html  
    enrich_GO_terms-class                   html  
    gene2GO-class                           html  
    genomic_ressource-class                 html  
    merge_enrich_terms-methods              html  
    myGOs                                   html  
    overLapper                              html  
    finding level-2 HTML links ... done

    pkgdiagram                              html  
    show_heatmap-methods                    html  
    show_table-methods                      html  
    taxonomy                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ViSEAGO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ViSEAGO' as ViSEAGO_1.2.0.zip
* DONE (ViSEAGO)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ViSEAGO' successfully unpacked and MD5 sums checked