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BUILD report for ToPASeq on celaya2

This page was generated on 2020-01-16 13:40:41 -0500 (Thu, 16 Jan 2020).

Package 1730/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ToPASeq 1.21.1
Ivana Ihnatova
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/ToPASeq
Branch: master
Last Commit: 96dd3e3
Last Changed Date: 2020-01-13 10:53:59 -0500 (Mon, 13 Jan 2020)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: ToPASeq
Version: 1.21.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ToPASeq
StartedAt: 2020-01-15 21:48:58 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 21:52:59 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 240.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ToPASeq
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* checking for file ‘ToPASeq/DESCRIPTION’ ... OK
* preparing ‘ToPASeq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ToPASeq.Rmd’ using rmarkdown
Quitting from lines 177-179 (ToPASeq.Rmd) 
Error: processing vignette 'ToPASeq.Rmd' failed with diagnostics:
Gene names in a pathway and in data don't match
--- failed re-building ‘ToPASeq.Rmd’

--- re-building ‘ToPASeq_allMethods.Rmd’ using rmarkdown
Quitting from lines 143-145 (ToPASeq_allMethods.Rmd) 
Error: processing vignette 'ToPASeq_allMethods.Rmd' failed with diagnostics:
No pathway was sucessfully tested
--- failed re-building ‘ToPASeq_allMethods.Rmd’

SUMMARY: processing the following files failed:
  ‘ToPASeq.Rmd’ ‘ToPASeq_allMethods.Rmd’

Error: Vignette re-building failed.
Execution halted