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BUILD BIN report for TCC on tokay2

This page was generated on 2020-10-16 11:59:02 -0400 (Fri, 16 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE TCC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1783/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCC 1.28.0
Jianqiang Sun
Snapshot Date: 2020-10-15 14:40:03 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/TCC
Branch: RELEASE_3_11
Last Commit: 61930ac
Last Changed Date: 2020-04-27 14:36:08 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: TCC
Version: 1.28.0
Command: rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCC.buildbin-libdir TCC_1.28.0.tar.gz
StartedAt: 2020-10-16 11:28:02 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 11:28:59 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 56.4 seconds
RetCode: 0
Status:  OK  
PackageFile: TCC_1.28.0.zip
PackageFileSize: 1.943 MiB

Command output

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###
### Running command:
###
###   rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCC.buildbin-libdir TCC_1.28.0.tar.gz
###
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install for i386

* installing *source* package 'TCC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2 
Creating a new generic function for 'calcNormFactors' in package 'TCC'
** help
*** installing help indices
  converting help for package 'TCC'
    finding HTML links ... done
    ROKU                                    html  
    TCC-class                               html  
    TCC                                     html  
    WAD                                     html  
    arab                                    html  
    calcAUCValue                            html  
    calcNormFactors                         html  
    clusterSample                           html  
    estimateDE                              html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpstmwAE/R.INSTALL228c2b345ef9/TCC/man/estimateDE.Rd:66: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpstmwAE/R.INSTALL228c2b345ef9/TCC/man/estimateDE.Rd:73: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpstmwAE/R.INSTALL228c2b345ef9/TCC/man/estimateDE.Rd:81: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpstmwAE/R.INSTALL228c2b345ef9/TCC/man/estimateDE.Rd:128: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpstmwAE/R.INSTALL228c2b345ef9/TCC/man/estimateDE.Rd:152: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
    filterLowCountGenes                     html  
    getNormalizedData                       html  
    getResult                               html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpstmwAE/R.INSTALL228c2b345ef9/TCC/man/getResult.Rd:20: file link 'plot' in package 'TCC' does not exist and so has been treated as a topic
    hypoData                                html  
    hypoData_mg                             html  
    hypoData_ts                             html  
    makeFCMatrix                            html  
    nakai                                   html  
    plot.TCC                                html  
    plotFCPseudocolor                       html  
    simulateReadCounts                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TCC' ...
** testing if installed package can be loaded
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
* MD5 sums
packaged installation of 'TCC' as TCC_1.28.0.zip
* DONE (TCC)