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BUILD BIN report for StructuralVariantAnnotation on tokay2

This page was generated on 2020-10-16 11:58:59 -0400 (Fri, 16 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE StructuralVariantAnnotation PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1754/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
StructuralVariantAnnotation 1.4.0
Daniel Cameron
Snapshot Date: 2020-10-15 14:40:03 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/StructuralVariantAnnotation
Branch: RELEASE_3_11
Last Commit: 67e0325
Last Changed Date: 2020-04-27 15:27:28 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: StructuralVariantAnnotation
Version: 1.4.0
Command: rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.4.0.tar.gz
StartedAt: 2020-10-16 11:26:07 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 11:27:42 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 95.2 seconds
RetCode: 0
Status:  OK  
PackageFile: StructuralVariantAnnotation_1.4.0.zip
PackageFileSize: 656.1 KiB

Command output

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### Running command:
###
###   rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.4.0.tar.gz
###
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install for i386

* installing *source* package 'StructuralVariantAnnotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'StructuralVariantAnnotation'
    finding HTML links ... done
    StructuralVariantAnnotation             html  
    align_breakpoints                       html  
    breakendRanges                          html  
    breakpointGRangesToVCF                  html  
    breakpointRanges                        html  
    breakpointgr2bedpe                      html  
    calculateReferenceHomology              html  
    countBreakpointOverlaps                 html  
    dot-constrict                           html  
    dot-isSymbolic                          html  
    dot-pairwiseLCPrefix                    html  
    dot-svLen                               html  
    dot-testfile                            html  
    dot-testrecord                          html  
    dot-toVcfBreakendNotationAlt            html  
    dot-unXStringSet                        html  
    elementExtract                          html  
    extractBreakpointSequence               html  
    extractReferenceSequence                html  
    findBreakpointOverlaps                  html  
    findInsDupOverlaps                      html  
    grapes-na-grapes                        html  
    grapes-null-grapes                      html  
    isStructural                            html  
    isSymbolic                              html  
    pairs2breakpointgr                      html  
    partner                                 html  
    simpleEventLength                       html  
    simpleEventType                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'StructuralVariantAnnotation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'StructuralVariantAnnotation' as StructuralVariantAnnotation_1.4.0.zip
* DONE (StructuralVariantAnnotation)