| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:43 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SELEX PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1620/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SELEX 1.20.0 Harmen J. Bussemaker
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
| Package: SELEX |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings SELEX_1.20.0.tar.gz |
| StartedAt: 2020-10-17 05:21:27 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 05:23:17 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 109.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SELEX.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings SELEX_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/SELEX.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SELEX/DESCRIPTION’ ... OK
* this is package ‘SELEX’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SELEX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SELEX 26.482 1.468 9.911
selex.seqfilter 9.846 0.178 2.877
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
| name | user | system | elapsed | |
| SELEX | 26.482 | 1.468 | 9.911 | |
| selex.affinities | 0.894 | 0.014 | 0.441 | |
| selex.config | 0.152 | 0.011 | 0.048 | |
| selex.countSummary | 1.331 | 0.037 | 0.412 | |
| selex.counts | 1.192 | 0.019 | 0.658 | |
| selex.defineSample | 0.081 | 0.004 | 0.050 | |
| selex.exampledata | 0.076 | 0.000 | 0.037 | |
| selex.fastqPSFM | 1.035 | 0.016 | 0.505 | |
| selex.getAttributes | 0.245 | 0.009 | 0.076 | |
| selex.getRound0 | 0.288 | 0.008 | 0.128 | |
| selex.getSeqfilter | 0.109 | 0.004 | 0.037 | |
| selex.infogain | 2.052 | 0.021 | 0.629 | |
| selex.infogainSummary | 0.872 | 0.012 | 0.327 | |
| selex.jvmStatus | 0.103 | 0.000 | 0.045 | |
| selex.kmax | 1.100 | 0.164 | 0.885 | |
| selex.kmerPSFM | 0.629 | 0.028 | 0.261 | |
| selex.loadAnnotation | 0.282 | 0.008 | 0.133 | |
| selex.mm | 0.898 | 0.003 | 0.297 | |
| selex.mmProb | 0.547 | 0.016 | 0.325 | |
| selex.mmSummary | 0.341 | 0.007 | 0.332 | |
| selex.revcomp | 1.016 | 0.003 | 0.532 | |
| selex.run | 1.760 | 0.024 | 0.645 | |
| selex.sample | 0.208 | 0.008 | 0.104 | |
| selex.samplePSFM | 1.298 | 0.004 | 0.466 | |
| selex.sampleSummary | 0.206 | 0.007 | 0.070 | |
| selex.saveAnnotation | 0.091 | 0.001 | 0.035 | |
| selex.seqfilter | 9.846 | 0.178 | 2.877 | |
| selex.setwd | 0.087 | 0.004 | 0.023 | |
| selex.split | 0.427 | 0.012 | 0.211 | |
| selex.summary | 0.807 | 0.020 | 0.645 | |