Jitao David Zhang
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/RpsiXML |
| Branch: RELEASE_3_11 |
| Last Commit: 6461359 |
| Last Changed Date: 2020-04-27 14:17:48 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:41 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE RpsiXML PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1531/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RpsiXML 2.30.0 Jitao David Zhang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: RpsiXML |
| Version: 2.30.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RpsiXML_2.30.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.30.0.zip && rm RpsiXML_2.30.0.tar.gz RpsiXML_2.30.0.zip |
| StartedAt: 2020-10-16 18:36:39 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:38:03 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 84.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RpsiXML_2.30.0.tar.gz && rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RpsiXML.buildbin-libdir RpsiXML_2.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.30.0.zip && rm RpsiXML_2.30.0.tar.gz RpsiXML_2.30.0.zip
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install for i386
* installing *source* package 'RpsiXML' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
Note: in method for 'head' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
Note: in method for 'tail' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
** help
*** installing help indices
converting help for package 'RpsiXML'
finding HTML links ... done
BIOGRID.PSIMI25 html
availableXrefs-methods html
availableXrefs html
bait html
buildPCHypergraph html
complexName html
complexes html
eListHandler html
getAbstractByPMID html
graphSpeciesConverter html
interactionType html
interactions html
interactorInfo-methods html
interactorInfo html
interactors html
list2Matrix html
null2na html
numInteractions-methods html
parsePsimi25Interaction html
psimi25Attribute-class html
psimi25Complex-class html
psimi25ComplexEntry-class html
psimi25Experiment-class html
psimi25Graph-class html
psimi25Hypergraph-class html
psimi25Hypergraph2GraphNEL html
psimi25Interaction-class html
psimi25InteractionEntry-class html
psimi25Interactor-class html
psimi25Source-class html
psimi25XML2Graph html
separateXMLDataByExpt html
sourceId-methods html
taxId-methods html
translateID-methods html
translateID html
uniprot-methods html
uniprot html
validatePSIMI25 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
** testing if installed package can be loaded from final location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RpsiXML' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
* MD5 sums
packaged installation of 'RpsiXML' as RpsiXML_2.30.0.zip
* DONE (RpsiXML)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'RpsiXML' successfully unpacked and MD5 sums checked