| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:21 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE RCASPAR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1430/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RCASPAR 1.34.0 Douaa Mugahid
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
| Package: RCASPAR |
| Version: 1.34.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RCASPAR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RCASPAR_1.34.0.tar.gz |
| StartedAt: 2020-10-17 04:23:10 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 04:23:42 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 32.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RCASPAR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RCASPAR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RCASPAR_1.34.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/RCASPAR.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCASPAR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCASPAR’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RCASPAR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
kmplt_svrl: no visible global function definition for ‘lines’
kmplt_svrl: no visible global function definition for ‘legend’
logrnk: no visible global function definition for ‘pchisq’
pltprior: no visible global function definition for ‘persp’
weights_BLH: no visible global function definition for ‘optim’
Undefined global functions or variables:
legend lines optim pchisq persp
Consider adding
importFrom("graphics", "legend", "lines", "persp")
importFrom("stats", "optim", "pchisq")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.11-bioc/meat/RCASPAR.Rcheck/00check.log’
for details.
RCASPAR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RCASPAR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘RCASPAR’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCASPAR)
RCASPAR.Rcheck/RCASPAR-Ex.timings
| name | user | system | elapsed | |
| Bergamaschi | 0.022 | 0.006 | 0.028 | |
| RCASPAR-package | 0.588 | 0.049 | 0.639 | |
| STpredictor_BLH | 0.068 | 0.014 | 0.082 | |
| STpredictor_xvBLH | 0.655 | 0.033 | 0.689 | |
| deriv_weight_estimator_BLH | 0.004 | 0.002 | 0.007 | |
| deriv_weight_estimator_BLH_noprior | 0.003 | 0.002 | 0.005 | |
| kmplt | 0.003 | 0.001 | 0.003 | |
| kmplt_svrl | 0.010 | 0.001 | 0.011 | |
| logrnk | 0.003 | 0.001 | 0.004 | |
| pltgamma | 0.003 | 0.001 | 0.004 | |
| pltprior | 0.002 | 0.001 | 0.004 | |
| simpson | 0.001 | 0.001 | 0.002 | |
| survData | 0.002 | 0.002 | 0.004 | |
| survivAURC | 0.207 | 0.011 | 0.220 | |
| survivROC | 0.066 | 0.007 | 0.074 | |
| trapezoid | 0.000 | 0.001 | 0.001 | |
| weight_estimator_BLH | 0.000 | 0.000 | 0.001 | |
| weight_estimator_BLH_noprior | 0.004 | 0.003 | 0.007 | |
| weights_BLH | 0.004 | 0.003 | 0.007 | |
| weights_xvBLH | 0.051 | 0.005 | 0.055 | |