Package: PepsNMR

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.5.0.tar.gz

StartedAt: 2020-01-16 07:22:09 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 07:40:23 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 1093.6 seconds

RetCode: 0

Status:  OK

CheckDir: PepsNMR.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/PepsNMR.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
PreprocessingChain 392.888 92.049 485.861
PEPSNMR-package    384.599 90.427 475.206
Warping             19.034  6.797  25.838
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PepsNMR
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘PepsNMR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PepsNMR)

name	user	system	elapsed
Apodization	0.672	0.160	0.841
BaselineCorrection	0.758	0.345	1.105
Bucketing	0.149	0.014	0.162
Draw	2.486	0.169	2.658
DrawPCA	1.245	0.055	1.300
DrawSignal	1.377	0.031	1.410
FirstOrderPhaseCorrection	0.065	0.020	0.085
FourierTransform	0.043	0.019	0.063
GroupDelayCorrection	0.089	0.019	0.108
InternalReferencing	0.060	0.017	0.077
NegativeValuesZeroing	0.048	0.017	0.065
Normalization	0.020	0.000	0.021
PEPSNMR-package	384.599	90.427	475.206
PreprocessingChain	392.888	92.049	485.861
ReadFids	0.365	0.131	0.496
RegionRemoval	0.011	0.000	0.012
SolventSuppression	0.160	0.116	0.277
Warping	19.034	6.797	25.838
WindowSelection	0.049	0.011	0.061
ZeroFilling	0.151	0.013	0.164
ZeroOrderPhaseCorrection	0.186	0.160	0.346
ZoneAggregation	0.354	0.129	0.490