| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:23 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PING PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1315/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PING 2.32.0 Renan Sauteraud
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | WARNINGS | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
| Package: PING |
| Version: 2.32.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL PING |
| StartedAt: 2020-10-16 17:29:02 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:30:04 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 62.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL PING
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘PING’ ...
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c ping.c -o ping.o
ping.c: In function ‘fitModelAllk’:
ping.c:145:40: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
if( REAL(VECTOR_ELT(paraPrior, 5))[0]>0 & REAL(VECTOR_ELT(paraEM, 0))[0]==0) // automatically decide minK and maxKK for histone data, when minK=0
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
ping.c: In function ‘ECM2’:
ping.c:1536:9: warning: variable ‘chiSum’ set but not used [-Wunused-but-set-variable]
double chiSum = 0, etaF, etaR, dd, cc;
^~~~~~
ping.c: In function ‘mergePeak’:
ping.c:3280:20: warning: variable ‘tstatMax’ set but not used [-Wunused-but-set-variable]
double tstat=0.0,tstatMax=0.0;
^~~~~~~~
ping.c: In function ‘fitModelK’:
ping.c:477:18: warning: ‘firstFit’ may be used uninitialized in this function [-Wmaybe-uninitialized]
SEXP ans, temp, firstFit;
^~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o PING.so init.o ping.o -lgsl -lgslcblas -lm -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-PING/00new/PING/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PING)