Package: OUTRIDER

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OUTRIDER

StartedAt: 2020-01-16 00:06:13 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 00:09:45 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 212.1 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OUTRIDER
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* checking for file ‘OUTRIDER/DESCRIPTION’ ... OK
* preparing ‘OUTRIDER’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘OUTRIDER.Rnw’ using knitr
Warning in has_utility("convert", "ImageMagick") :
  ImageMagick not installed or not in PATH
229 genes did not passed the filter due to zero counts. This is 22.9% of the genes.
Thu Jan 16 00:08:11 2020: SizeFactor estimation ...
Thu Jan 16 00:08:11 2020: Controlling for confounders ...
Using estimated q with: 23
Thu Jan 16 00:08:11 2020: Using the autoencoder implementation for controlling.
Thu Jan 16 00:09:34 2020: Used the autoencoder implementation for controlling.
Thu Jan 16 00:09:34 2020: P-value calculation ...
Thu Jan 16 00:09:35 2020: Zscore calculation ...
Quitting from lines 220-235 (OUTRIDER.Rnw) 
Error: processing vignette 'OUTRIDER.Rnw' failed with diagnostics:
no lines available in input
--- failed re-building ‘OUTRIDER.Rnw’

SUMMARY: processing the following file failed:
  ‘OUTRIDER.Rnw’

Error: Vignette re-building failed.
Execution halted